View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_53 (Length: 371)
Name: NF11787_high_53
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 26667770 - 26667931
Alignment:
| Q |
199 |
gtcatatagtctaatcgaaataaattcactttttaaaaataaataaatgagatatatagggttcgtactcaaccatacacatataatgcgatattcatat |
298 |
Q |
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| T |
26667770 |
gtcatataatctaatcgaaataaattcactttttaaaaataaataaatgagatatatagggttcatactcaaccataca-atataatgcgatattcatat |
26667868 |
T |
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| Q |
299 |
tataagtgaattttctatcaaataagttaaacttatatgttactggacaatattttacctttg |
361 |
Q |
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| T |
26667869 |
tataagtgaattttctatcaagtaagttaaacttatatgttactaaacaatattttacctttg |
26667931 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 26667593 - 26667674
Alignment:
| Q |
19 |
ggtactaaattgttacaacgtcctattgtaacagtaggaaatcaagatccgtatttttgtgagtgtgccttaataaatttgc |
100 |
Q |
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| T |
26667593 |
ggtactaaattgttacaacgtcctattgtaacagtaggaaatccagatccgtatttttgtgagtgtgccttaataaatttgc |
26667674 |
T |
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