View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_high_55 (Length: 366)
Name: NF11787_high_55
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 41531135 - 41531325
Alignment:
| Q |
162 |
cacttaatcacaatagttgttgtcatgtctgatcagcacatctttgtgaacaaacgacatgtaagtaaccaagtatgcaactacttccaaagggaaaaac |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531135 |
cacttaatcacaatagttgttgtcatgtctgatcagcacatctttgtgaacaaacgacatgtaagtaaccaagtatgcaactacttccaaagggaaaaac |
41531234 |
T |
|
| Q |
262 |
gtgtgtagaaactacctcatcctcatgcctactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531235 |
gtgtgtagaaactacctcatcctcatgcccactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatc |
41531325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 41530974 - 41531088
Alignment:
| Q |
1 |
agaaaactgttgtaccaaaaaatagtaaggaaaactcattaacactctatacgtggagaaaatttagttaaattacttgctggtgcaaatgcaagagtcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41530974 |
agaaaactgttgtaccaaaaaatagtaaggaaaactcattaacactctatacgtggagaaaatttagttaaattacttgctggtgcaaatgcaagagtcc |
41531073 |
T |
|
| Q |
101 |
cattcatttgtatcg |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41531074 |
cattcatttgtatcg |
41531088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 41231988 - 41232075
Alignment:
| Q |
180 |
gttgtcatgtctgatcagcacatctttgtgaacaaacgacatgtaagtaaccaagtatgcaactacttccaaagggaaaaacgtgtgtagaaacta |
275 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
41231988 |
gttggcatgtctaatcagcacatctttgtgaacaaacaaaatgaaagt--------atgcaactacttccaaagggaaaaaagtgtgcataaacta |
41232075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University