View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_56 (Length: 361)
Name: NF11787_high_56
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 52051370 - 52051549
Alignment:
| Q |
1 |
ccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaaaaatagcattggcatgcaccaccactgtaatcaca |
100 |
Q |
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| T |
52051370 |
ccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaaaaatagcattggcatgcaccaccactgtaatcaca |
52051469 |
T |
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| Q |
101 |
accattagttcatatccatgtacagaagattctgtaacactatggtccctcaaataaatatacctattctaattctagta |
180 |
Q |
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| T |
52051470 |
accattagttcatatccatgtacagaagattctgtaacactatggtccctcaaataaatatacctattctaattctagta |
52051549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 52051616 - 52051714
Alignment:
| Q |
247 |
gctcataacaaaacaacaatgatgaatggaagaaacaggtatccttttactccaactcagtggcaagagcttgaacatcaagctcttatctacaaatac |
345 |
Q |
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| T |
52051616 |
gctcataacaaaacaacaatgatgaatggaagaaacaggtatccttttactccaactcagtggcaagagcttgaacatcaagctcttatctacaaatac |
52051714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 18200243 - 18200190
Alignment:
| Q |
288 |
tccttttactccaactcagtggcaagagcttgaacatcaagctcttatctacaa |
341 |
Q |
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| T |
18200243 |
tccttttactccttcacaatggcaagaacttgaacatcaagctcttatttacaa |
18200190 |
T |
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