View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_59 (Length: 346)
Name: NF11787_high_59
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 37457532 - 37457791
Alignment:
| Q |
1 |
aggtcaagacatttgcacactgatgaaaattacatgaccaaattatgactcaaggttatttatttaacttatttgtttgtgttaatgctttacgtcagtt |
100 |
Q |
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| T |
37457532 |
aggtcaagacatttgcacactgatgaaaattacatgaccaaattatgactcaaggttatttatttaacttatttgtttgtgttaatgctttacgtcagtt |
37457631 |
T |
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| Q |
101 |
ccttctactttaaagaaaaggatcagtattccatggctgactgtgagcacaaagaaatggctaggactagtgaagtcggtaccgcttccaaatgaggtgc |
200 |
Q |
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| T |
37457632 |
ccttctactttaaagaaaaggatcagtattccatggctgactgtgagcacaaagaaatggctaggactagtgaagtcggtaccgcttccaaatgaggtgc |
37457731 |
T |
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| Q |
201 |
ggcaagaagtggtgtagaagataatgatataaacgatgatacttcagtctcttgggagtt |
260 |
Q |
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| T |
37457732 |
ggcaagaagtggtgtagaagataatgatataaacgatgatacttcagtctcttgggagtt |
37457791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 37457897 - 37457963
Alignment:
| Q |
261 |
tgtatagggtaatatctctctgcatcatatgggtagaacttaaaagaatcaattctactgtttttta |
327 |
Q |
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| T |
37457897 |
tgtatagggtaatatctctctgcatcatatgggtagaacttaaaagaatcaattctactgtttttta |
37457963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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