View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_6 (Length: 681)
Name: NF11787_high_6
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 462 - 673
Target Start/End: Complemental strand, 4094409 - 4094195
Alignment:
| Q |
462 |
cactgcataacataa---atgaaactttgattcataattggacaatgcggtggtttcaattgagtacaagctccgaaagggaccaccggaacactcagaa |
558 |
Q |
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| T |
4094409 |
cactgcataacataattaatgaaactgtgattcataattggacaatgcggtggtttcaattgagtacaagctccgaaagggaccaccggaacactcagaa |
4094310 |
T |
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| Q |
559 |
tgcttctcgtgctatggtgtatctcaatgtatatgatcttactccaatcaataattatctttatctctttggctttggaatctttcattccggtattgaa |
658 |
Q |
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| T |
4094309 |
tacttctcgtgctatggtgtatctcaatgtatatgatcttactccaatcaataattatctttatctctttggctttggaatctttcattccggtattgaa |
4094210 |
T |
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| Q |
659 |
ggtttcttctctctc |
673 |
Q |
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| T |
4094209 |
ggttttctctctctc |
4094195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 234 - 410
Target Start/End: Complemental strand, 4094651 - 4094475
Alignment:
| Q |
234 |
ttgtgttagtgaacgaaacccgtgcaattaaatgtgggtggtagataatgatgacggcgaaaggacagaaaccaaatcgaaatctaaaatctaaagtcag |
333 |
Q |
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| T |
4094651 |
ttgtgttagtgaacgaaacccgtgcaattaaatgtggatggtagataatgatgacggcgaaaggacagaacccaaatcgaaatctaaaatctaaagtcag |
4094552 |
T |
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| Q |
334 |
tgtgatttcaacttacgaacttgacacaattaattcatatcagatcctccactctgtctgtctgtctcgtaagtttc |
410 |
Q |
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| T |
4094551 |
tgtgatttcaacttacgaacttgacacaattaattcatatcagatcctccactctgtatgtctgtctcgtaagtttc |
4094475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 4096060 - 4096014
Alignment:
| Q |
8 |
agaatgaaatagtttatgttaaaccttaactgaacataaagttgtga |
54 |
Q |
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| T |
4096060 |
agaatgaaatagtttatgttaaaccttaactcaacataaagttgtga |
4096014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 4096028 - 4095993
Alignment:
| Q |
54 |
aacataaagttgtgataaaaagaaactttggtcctc |
89 |
Q |
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| T |
4096028 |
aacataaagttgtgataaaaagaaactttggtcctc |
4095993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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