View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_63 (Length: 320)
Name: NF11787_high_63
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 46054127 - 46054436
Alignment:
| Q |
1 |
atcacagcagtgcacctttctcgacttggtgaagaatgggtactgtgggcttcagaggaatttggatttatcaccccaagcgactctgtttcaacgggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46054127 |
atcacagcagtgcacctttctcgacttggtgaagaatgggtactgtgggcttcagaggaatttggatttatcaccccaagcgactctgtttcaacgggaa |
46054226 |
T |
|
| Q |
101 |
gcagtataatgcctcagaaaaagaatcctgatccaatggaacttgttcgtggtaagtctgccagagtcataggaggtttggtcactcttctcacattgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46054227 |
gcagtataatgcctcagaaaaagaatcctgatccaatggaacttgttcgtggtaagtctgccagagtcataggaggtttggtcactcttctcacattgtg |
46054326 |
T |
|
| Q |
201 |
caaaggacttccacatgcttacaatcgtgatttgcaggtagttagatattcaaagcataatgtttaacttttcttgccttgcgtgttttctctgcagttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46054327 |
caaaggacttccacatgcttacaatcgtgatttgcaggtagttagatattcaaagcataatgtttaacttttcttgccttgcgtgttttctctgcagttc |
46054426 |
T |
|
| Q |
301 |
ttgtattcat |
310 |
Q |
| |
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|||||||||| |
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| T |
46054427 |
ttgtattcat |
46054436 |
T |
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