View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_high_78 (Length: 239)

Name: NF11787_high_78
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_high_78
NF11787_high_78
[»] chr8 (16 HSPs)
chr8 (55-138)||(11676979-11677062)
chr8 (96-144)||(43925018-43925066)
chr8 (97-144)||(43924490-43924537)
chr8 (102-144)||(12349967-12350009)
chr8 (98-144)||(12350656-12350702)
chr8 (96-139)||(37639716-37639759)
chr8 (80-130)||(22939032-22939082)
chr8 (95-144)||(61454-61503)
chr8 (95-144)||(1365829-1365878)
chr8 (95-144)||(25247737-25247786)
chr8 (95-144)||(39255751-39255800)
chr8 (95-128)||(41649764-41649797)
chr8 (96-137)||(41859317-41859358)
chr8 (95-144)||(44751608-44751657)
chr8 (96-144)||(35840530-35840578)
chr8 (96-144)||(35943076-35943124)
[»] chr7 (18 HSPs)
chr7 (62-145)||(5487348-5487431)
chr7 (76-139)||(20890204-20890267)
chr7 (96-145)||(46756269-46756318)
chr7 (97-145)||(45887278-45887326)
chr7 (97-144)||(44909360-44909407)
chr7 (96-146)||(38779563-38779613)
chr7 (96-137)||(668186-668227)
chr7 (96-137)||(7677809-7677850)
chr7 (96-137)||(17145629-17145670)
chr7 (96-145)||(27600095-27600144)
chr7 (96-137)||(37468917-37468958)
chr7 (96-137)||(37469005-37469046)
chr7 (96-137)||(38778861-38778902)
chr7 (96-137)||(41194520-41194561)
chr7 (96-144)||(5064645-5064693)
chr7 (96-144)||(27599211-27599259)
chr7 (97-145)||(41533895-41533943)
chr7 (96-144)||(43846916-43846963)
[»] chr2 (9 HSPs)
chr2 (182-223)||(45327334-45327375)
chr2 (95-144)||(5276465-5276514)
chr2 (96-144)||(36390957-36391005)
chr2 (96-144)||(41985892-41985940)
chr2 (95-145)||(33433159-33433209)
chr2 (96-130)||(41519925-41519959)
chr2 (96-137)||(21471024-21471065)
chr2 (96-137)||(21471954-21471995)
chr2 (96-128)||(37545692-37545724)
[»] chr3 (8 HSPs)
chr3 (97-144)||(38337478-38337525)
chr3 (79-145)||(39901845-39901911)
chr3 (96-137)||(19132812-19132853)
chr3 (76-144)||(16138556-16138624)
chr3 (104-144)||(42108370-42108410)
chr3 (97-144)||(38336944-38336991)
chr3 (96-137)||(36750437-36750478)
chr3 (96-144)||(53714416-53714464)
[»] chr4 (15 HSPs)
chr4 (80-145)||(31678753-31678818)
chr4 (96-144)||(6246784-6246832)
chr4 (76-144)||(31807082-31807150)
chr4 (96-130)||(232049-232083)
chr4 (98-144)||(6247473-6247519)
chr4 (97-139)||(10421582-10421624)
chr4 (70-144)||(25890904-25890978)
chr4 (94-144)||(36957574-36957624)
chr4 (96-137)||(11417694-11417735)
chr4 (96-137)||(11417937-11417978)
chr4 (96-137)||(29651332-29651373)
chr4 (96-137)||(36865717-36865758)
chr4 (96-137)||(47377598-47377639)
chr4 (96-144)||(25970106-25970154)
chr4 (96-144)||(47376852-47376900)
[»] chr1 (11 HSPs)
chr1 (97-145)||(14924673-14924721)
chr1 (97-144)||(11469081-11469128)
chr1 (95-144)||(35616774-35616823)
chr1 (93-137)||(37822479-37822523)
chr1 (96-144)||(45922232-45922280)
chr1 (97-144)||(14925343-14925390)
chr1 (96-137)||(16270214-16270255)
chr1 (96-137)||(23440865-23440906)
chr1 (96-137)||(51974444-51974485)
chr1 (59-119)||(34717623-34717683)
chr1 (96-144)||(51987827-51987875)
[»] chr5 (12 HSPs)
chr5 (93-138)||(26316926-26316971)
chr5 (96-130)||(16689607-16689641)
chr5 (97-143)||(26712389-26712435)
chr5 (97-143)||(26982127-26982173)
chr5 (95-144)||(4301905-4301954)
chr5 (93-138)||(5749331-5749376)
chr5 (96-137)||(8204127-8204168)
chr5 (97-130)||(9142061-9142094)
chr5 (96-137)||(15184017-15184058)
chr5 (96-137)||(33002816-33002857)
chr5 (97-145)||(2319265-2319313)
chr5 (97-137)||(39950411-39950451)
[»] scaffold0189 (2 HSPs)
scaffold0189 (96-144)||(12859-12907)
scaffold0189 (98-144)||(12184-12230)
[»] chr6 (9 HSPs)
chr6 (96-144)||(24125972-24126020)
chr6 (96-144)||(33018416-33018464)
chr6 (96-137)||(7193345-7193386)
chr6 (95-144)||(9574570-9574619)
chr6 (96-137)||(22582479-22582520)
chr6 (96-137)||(22587310-22587351)
chr6 (96-137)||(33480628-33480669)
chr6 (96-148)||(3543063-3543115)
chr6 (96-144)||(24126718-24126766)
[»] scaffold0311 (1 HSPs)
scaffold0311 (96-137)||(160-201)
[»] scaffold0051 (1 HSPs)
scaffold0051 (84-144)||(13569-13629)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 11677062 - 11676979
Alignment:
Q  55 cctaaaccggttaccaacctacacctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaac 138  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  11677062 cctaaaccggttaccaacctatacctgtcctgaaaagggggactttttcatggtgggaaagaacttccctttcccaaattaaac 11676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 43925018 - 43925066
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  43925018 actttctcatggtgggaaacaacttccctttcccaaattaaacgccacc 43925066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 43924537 - 43924490
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 12350009 - 12349967
Alignment:
Q  102 ccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  12350009 ccatggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 12350656 - 12350702
Alignment:
Q  98 tttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||    
T  12350656 tttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 12350702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 37639759 - 37639716
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacg 139  Q
    ||||||||||||||||||||||||  |||||||||| |||||||    
T  37639759 actttcccatggtgggaaagaactctcctttcccaaattaaacg 37639716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 22939032 - 22939082
Alignment:
Q  80 tgtcctggaaagggggactttcccatggtgggaaagaacttccctttccca 130  Q
    |||||| |||| ||| |||||||||||||||||||||||| ||| ||||||    
T  22939032 tgtcctagaaaagggcactttcccatggtgggaaagaactacccattccca 22939082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 61503 - 61454
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||||| |  |||||||||| ||||| ||||||    
T  61503 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 61454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 1365878 - 1365829
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||||| |  |||||||||| ||||| ||||||    
T  1365878 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 25247737 - 25247786
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||| |||||| || ||||||||| |||||||| ||||    
T  25247737 gactttcccatggtggcaaagaaatttcctttcccaggttaaacggcacc 25247786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 39255751 - 39255800
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||||| |  | |||||||||||||| ||||||    
T  39255751 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgccacc 39255800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 41649764 - 41649797
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcc 128  Q
    |||||||||||| |||||||||||||||||||||    
T  41649764 gactttcccatgatgggaaagaacttccctttcc 41649797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 41859358 - 41859317
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaa 41859317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 44751657 - 44751608
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||| |||||||||| |  |||||||||||||||| ||||||    
T  44751657 gactttcccatgatgggaaagaagtctcctttcccaagttaaatgccacc 44751608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 35840530 - 35840578
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||| |||||||| ||||||||||||||| | ||||| |||||    
T  35840530 actttcccatcgtgggaaacaacttccctttcccatgctaaaccccacc 35840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 35943124 - 35943076
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||| |||||||||||||| ||||||||||||||| | ||||| |||||    
T  35943124 acttccccatggtgggaaacaacttccctttcccatgctaaaccccacc 35943076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 5487348 - 5487431
Alignment:
Q  62 cggttaccaacctacacctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  5487348 cggttaccaacctacacctgttctggaaagggagacttttccatggtgggaaagaacttccatttcccaggttaaacgccaccc 5487431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 20890267 - 20890204
Alignment:
Q  76 cacctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacg 139  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||  |||||||||| |||||||    
T  20890267 cacctgtcctggaaaaggacactttcccatggtgggaaaaaactgtcctttcccaaattaaacg 20890204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 46756318 - 46756269
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    ||||| ||||||||| ||| |||||||||||||||| |||||||||||||    
T  46756318 acttttccatggtggaaaacaacttccctttcccaaattaaacgccaccc 46756269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 45887326 - 45887278
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    |||||||||||||||||| ||||  |||||||||| |||||||||||||    
T  45887326 ctttcccatggtgggaaaaaactagcctttcccaaattaaacgccaccc 45887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 44909360 - 44909407
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||| ||||| |||||||||| ||||||| ||||    
T  44909360 ctttcccatggtgggaaaaaacttacctttcccaaattaaacggcacc 44909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 38779563 - 38779613
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacccc 146  Q
    ||||||||||||||||||||||||  |||||||||| ||||| | ||||||    
T  38779563 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacccc 38779613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 668227 - 668186
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  668227 actttcccatggtgggaaagaactctcctttcccaaattaaa 668186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 7677809 - 7677850
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  7677809 actttcccatggtgggaaagaactctcctttcccaaattaaa 7677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 17145670 - 17145629
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  17145670 actttcccatggtgggaaagaactctcctttcccaaattaaa 17145629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 27600095 - 27600144
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    ||||||||||||||||||| |||| ||||||||||  ||||| |||||||    
T  27600095 actttcccatggtgggaaacaactcccctttcccattttaaatgccaccc 27600144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 37468958 - 37468917
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaa 37468917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 37469005 - 37469046
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  37469005 actttcccatggtgggaaagaactctcctttcccaaattaaa 37469046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 38778902 - 38778861
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaa 38778861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 41194561 - 41194520
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  41194561 actttcccatggtgggaaagaactctcctttcccaaattaaa 41194520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 5064645 - 5064693
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||| |||||||||||||||| |||||| | ||||| |||||    
T  5064645 actttcccatgatgggaaagaacttcccattcccatgctaaaccccacc 5064693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 27599259 - 27599211
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| |||| ||||||||||  ||||| ||||||    
T  27599259 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 41533943 - 41533895
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    |||||||||||||| ||| ||||| |||||||||| ||||||| |||||    
T  41533943 ctttcccatggtggaaaaaaacttacctttcccaaattaaacggcaccc 41533895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 43846916 - 43846963
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| |||| |||||||||| | |||||||||||    
T  43846916 actttcccatggtgggaaa-aactcccctttcccaggctaaacgccacc 43846963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 45327375 - 45327334
Alignment:
Q  182 gataagggagtataccttgcggtccaccaaaaaactcagttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45327375 gataagggagtataccttgcggtccaccaaaaaactcagttt 45327334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 5276514 - 5276465
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||||| |  |||||||||||||||| ||||||    
T  5276514 gactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 5276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 36391005 - 36390957
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| ||||||||||||||| | ||||| |||||    
T  36391005 actttcccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 41985892 - 41985940
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||||    
T  41985892 actttctcatggtggaaaacaacttccctttcccaaattaaacgccacc 41985940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 33433159 - 33433209
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    |||||||||||||||||||||||||  |||||| ||| ||||||| |||||    
T  33433159 gactttcccatggtgggaaagaactctcctttctcaaattaaacggcaccc 33433209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 41519925 - 41519959
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttccca 130  Q
    ||||||||||||||||||| |||||||||||||||    
T  41519925 actttcccatggtgggaaaaaacttccctttccca 41519959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 21471065 - 21471024
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaa 21471024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 21471954 - 21471995
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  21471954 actttcccatggtgggaaagaactctcctttcccaaattaaa 21471995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 37545724 - 37545692
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcc 128  Q
    ||||||||||||||||||| |||||||||||||    
T  37545724 actttcccatggtgggaaacaacttccctttcc 37545692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 38337478 - 38337525
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  38337478 ctttcccatggtgggaaacaacttccctttcccaaattaaacgccacc 38337525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 39901911 - 39901845
Alignment:
Q  79 ctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    ||||||||| ||  |||||||||||||||||||||||||||  | ||||||| |||||||| |||||    
T  39901911 ctgtcctgggaaaagggactttcccatggtgggaaagaactctcatttcccaggttaaacggcaccc 39901845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 19132812 - 19132853
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaa 19132853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 16138556 - 16138624
Alignment:
Q  76 cacctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||  || |||||| | |||||||||||    
T  16138556 cacctgtcctggaaaaggacactttcccatggtgggaaaaaactgtcccttcccaggctaaacgccacc 16138624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 42108410 - 42108370
Alignment:
Q  104 atggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  42108410 atggtgggaaacaacttccctttcccaaattaaacgccacc 42108370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 38336991 - 38336944
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||| |||||||||| ||||| ||||| ||||||    
T  38336991 ctttcccatggtgggaaacaacttcccttccccaaattaaatgccacc 38336944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 36750437 - 36750478
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaa 36750478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 53714416 - 53714464
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||| ||||||||||| |||||||||||| | ||||| |||||    
T  53714416 actttcccatagtgggaaagaatttccctttcccatgctaaactccacc 53714464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 31678818 - 31678753
Alignment:
Q  80 tgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    |||||||||||||||  ||||||||||||||| || |||| ||| |||||| ||||||||||||||    
T  31678818 tgtcctggaaaggggagctttcccatggtggggaaaaactccccattcccaggttaaacgccaccc 31678753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 6246832 - 6246784
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||||||    
T  6246832 actttcccatggtgggaaacaatttccctttcccaaattaaacgccacc 6246784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 31807082 - 31807150
Alignment:
Q  76 cacctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||| ||  || |||||||||||||||||||||||| ||| ||||||   |||||||||||    
T  31807082 cacctgtcctgggaaatggaactttcccatggtgggaaagaactccccattcccagactaaacgccacc 31807150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 232049 - 232083
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttccca 130  Q
    ||||||||||||||||||| |||||||||||||||    
T  232049 actttcccatggtgggaaacaacttccctttccca 232083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 6247473 - 6247519
Alignment:
Q  98 tttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||| || |||| |||||||||||||||| ||||||||||||    
T  6247473 tttcccatgatgagaaacaacttccctttcccaaattaaacgccacc 6247519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 10421582 - 10421624
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacg 139  Q
    |||||||||||||| ||| |||||||||||||||| |||||||    
T  10421582 ctttcccatggtggaaaacaacttccctttcccaaattaaacg 10421624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 25890978 - 25890904
Alignment:
Q  70 aacctacacctgtcctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||| |||||||||  |  ||||||||  ||||||||||||||||| | |||||||| |||||||| ||||    
T  25890978 aacctacaactgtcctggggaaagggactttttcatggtgggaaagaactcctctttcccaggttaaacggcacc 25890904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 36957574 - 36957624
Alignment:
Q  94 ggactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||| ||| ||||| ||||| | |||||||||||    
T  36957574 ggactttcccatggtgggaaaaaacatccctatcccaggctaaacgccacc 36957624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 11417735 - 11417694
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaa 11417694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 11417937 - 11417978
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  11417937 actttcccatggtgggaaagaactctcctttcccaaattaaa 11417978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 29651332 - 29651373
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaa 29651373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 36865717 - 36865758
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  36865717 actttcccatggtgggaaagaactctcctttcccaaattaaa 36865758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 47377598 - 47377639
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  47377598 actttcccatggtgggaaacaactcccctttcccaaattaaa 47377639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 25970154 - 25970106
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| |||| |||||||||| | ||||| |||||    
T  25970154 actttcccatggtgggaaacaactcccctttcccatgctaaaccccacc 25970106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 47376900 - 47376852
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||| ||||||| |||| ||||||||||| ||||| ||||||    
T  47376900 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 14924721 - 14924673
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    |||||||||||||||||| |||||||||||||||| |||||| ||||||    
T  14924721 ctttcccatggtgggaaacaacttccctttcccaaattaaacaccaccc 14924673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 11469128 - 11469081
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||    
T  11469128 ctttcccatggtgggaaacaacttccctttcctaaattaaacgccacc 11469081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 35616774 - 35616823
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||||| |  |||||||||||||||| ||||||    
T  35616774 gactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacc 35616823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 37822523 - 37822479
Alignment:
Q  93 gggactttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||    
T  37822523 gggacttttccatggtgggaaagaactttcctttcccaggttaaa 37822479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 45922280 - 45922232
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||| |||||    
T  45922280 actttcccatggtgggaaacaacctccctttcccatgttaaactccacc 45922232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 14925343 - 14925390
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||| ||||| |||| ||||| ||||||||||||    
T  14925343 ctttcccatggtgggaaacaactttccttccccaaattaaacgccacc 14925390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 16270255 - 16270214
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  16270255 actttcccatggtgggaaagaactctcctttcccaaattaaa 16270214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 23440865 - 23440906
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  23440865 actttcccatggtgggaaagaactctcctttcccaaattaaa 23440906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 51974485 - 51974444
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaa 51974444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 34717683 - 34717623
Alignment:
Q  59 aaccggttaccaacctacacctgtcctggaaagggggactttcccatggtgggaaagaact 119  Q
    |||||||||| |||   |||||| |||||||| ||| | ||||||||||||||||||||||    
T  34717683 aaccggttacaaacagccacctggcctggaaaagggcagtttcccatggtgggaaagaact 34717623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 51987875 - 51987827
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||||||||||||| |  |||||||||| ||||| ||||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 51987827  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 26316971 - 26316926
Alignment:
Q  93 gggactttcccatggtgggaaagaacttccctttcccaagttaaac 138  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||    
T  26316971 gggactttcccatggtgggaaagaagtttcctttcccaggttaaac 26316926  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 16689641 - 16689607
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttccca 130  Q
    ||||| |||||||||||||||||||||||||||||    
T  16689641 acttttccatggtgggaaagaacttccctttccca 16689607  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 26712389 - 26712435
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccac 143  Q
    |||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26712435  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 26982127 - 26982173
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccac 143  Q
    |||||||||||||||||| ||||||||||||||| | ||||| ||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26982173  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 4301954 - 4301905
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||| ||||||||||||||||||| |||  |||||| |||||    
T  4301954 gactttcccatgatgggaaagaacttcccttttccatattaaaccccacc 4301905  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 5749331 - 5749376
Alignment:
Q  93 gggactttcccatggtgggaaagaacttccctttcccaagttaaac 138  Q
    ||||||||||||| ||||||||||| || ||||||||| |||||||    
T  5749331 gggactttcccattgtgggaaagaagtttcctttcccaggttaaac 5749376  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 8204168 - 8204127
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaa 8204127  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 9142094 - 9142061
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttccca 130  Q
    |||||||||||||||||| |||||||||||||||    
T  9142094 ctttcccatggtgggaaacaacttccctttccca 9142061  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 15184017 - 15184058
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  15184017 actttcccatggtgggaaagaactctcctttcccaaattaaa 15184058  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 33002816 - 33002857
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  33002816 actttcccatggtgggaaagaactctcctttcccaaattaaa 33002857  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 2319313 - 2319265
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaacgccaccc 145  Q
    |||||||||||||||||| ||||  |||||||||| ||||| |||||||    
T  2319313 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccc 2319265  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 39950451 - 39950411
Alignment:
Q  97 ctttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaa 39950411  T

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Target: scaffold0189 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 12859 - 12907
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| |||||| ||| ||||| ||||||||||||    
T  12859 actttcccatggtgggaaacaacttcacttccccaaattaaacgccacc 12907  T

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Target: scaffold0189; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 12230 - 12184
Alignment:
Q  98 tttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||| |||||||||||| |||||| ||||||||| ||||||||||||    
T  12230 tttctcatggtgggaaacaacttctctttcccaaattaaacgccacc 12184  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 24126020 - 24125972
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||| |||| ||||||||||| ||||| ||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 33018416 - 33018464
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||||||||||||||||  |||||||||| ||||||| ||||    
T  33018416 actttcccatggtgggaaagaactctcctttcccaaattaaacgacacc 33018464  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 7193386 - 7193345
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaa 7193345  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 9574570 - 9574619
Alignment:
Q  95 gactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||| |||||||||||||| |  |||||||||||||||| ||||||    
T  9574570 gactttcctatggtgggaaagaagtctcctttcccaagttaaatgccacc 9574619  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 22582479 - 22582520
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  22582479 actttcccatggtgggaaagaactctcctttcccaaattaaa 22582520  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 22587310 - 22587351
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  22587310 actttcccatggtgggaaagaactctcctttcccaaattaaa 22587351  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 33480628 - 33480669
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  33480628 actttcccatggtgggaaagaactctcctttcccaaattaaa 33480669  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 3543063 - 3543115
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccaccccct 148  Q
    ||||||||||||||||||| ||||  |||||||||| ||||| | ||||||||    
T  3543063 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcaccccct 3543115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 24126718 - 24126766
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    ||||||||||| ||||||| |||| ||||||||||| ||||| ||||||    
T  24126718 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 160 - 201
Alignment:
Q  96 actttcccatggtgggaaagaacttccctttcccaagttaaa 137  Q
    ||||||||||||||||||||||||  |||||||||| |||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaa 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 13629 - 13569
Alignment:
Q  84 ctggaaagggggactttcccatggtgggaaagaacttccctttcccaagttaaacgccacc 144  Q
    |||||||||||  ||||||||||||||||   |||| ||| |||||||| |||||||||||    
T  13629 ctggaaaggggagctttcccatggtgggaggaaactccccattcccaagctaaacgccacc 13569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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