View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_high_80 (Length: 234)

Name: NF11787_high_80
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_high_80
NF11787_high_80
[»] chr2 (3 HSPs)
chr2 (1-223)||(5920989-5921211)
chr2 (1-223)||(36307293-36307515)
chr2 (91-176)||(23357661-23357746)
[»] chr5 (5 HSPs)
chr5 (33-223)||(22477233-22477423)
chr5 (1-45)||(7386587-7386631)
chr5 (1-45)||(39988660-39988704)
chr5 (62-176)||(41741209-41741324)
chr5 (1-45)||(8049739-8049783)
[»] chr1 (3 HSPs)
chr1 (33-223)||(35574077-35574267)
chr1 (32-125)||(35535482-35535575)
chr1 (91-176)||(292336-292421)
[»] chr6 (2 HSPs)
chr6 (33-223)||(16543524-16543714)
chr6 (33-223)||(17834422-17834612)
[»] scaffold0961 (1 HSPs)
scaffold0961 (33-223)||(690-880)
[»] chr4 (4 HSPs)
chr4 (32-223)||(15606424-15606615)
chr4 (32-223)||(15606776-15606967)
chr4 (91-223)||(16561501-16561633)
chr4 (62-150)||(28987914-28988004)
[»] chr3 (2 HSPs)
chr3 (32-223)||(23493415-23493607)
chr3 (91-223)||(16250806-16250937)
[»] scaffold1825 (1 HSPs)
scaffold1825 (137-223)||(307-391)
[»] chr7 (3 HSPs)
chr7 (137-223)||(37634515-37634599)
chr7 (41-125)||(19095438-19095522)
chr7 (60-219)||(3750120-3750275)
[»] chr8 (2 HSPs)
chr8 (36-125)||(36114643-36114732)
chr8 (97-176)||(29022652-29022731)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5921211 - 5920989
Alignment:
Q  1 caaacgcggtttggtttgacgctacaaatctgagcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaatt 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5921211 caaacgcggtttgggatgacgctacaaatctgagcttctgcggcagatcaaaatcacttttcaacctttaatttctcaaggtacaagtacttacctaatt 5921112  T
Q  101 acccctaaattcaagccttcaatttttcattctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagat 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5921111 acccctaaattcaagccttcaatttttctttctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctacttgggaagat 5921012  T
Q  201 tttgcaaatccaagctttcaatt 223  Q
    |||||||||||||||||||||||    
T  5921011 tttgcaaatccaagctttcaatt 5920989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36307293 - 36307515
Alignment:
Q  1 caaacgcggtttggtttgacgctacaaatctgagcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaatt 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36307293 caaacgcggtttgggatgacgctacaaatctgagcttctgcggcagatcaaaatcacttttcaacctttaatttctcaaggtacaagtacttacctaatt 36307392  T
Q  101 acccctaaattcaagccttcaatttttcattctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagat 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36307393 acccctaaattcaagccttcaatttttctttctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctacttgggaagat 36307492  T
Q  201 tttgcaaatccaagctttcaatt 223  Q
    |||||||||||||||||||||||    
T  36307493 tttgcaaatccaagctttcaatt 36307515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 23357661 - 23357746
Alignment:
Q  91 ttacctaattacccctaaattcaagccttcaatttttcattctc-ctagttttcttccttttcattacttcacatcacttcaacctt 176  Q
    ||||| |||||||| |||||||||||||||||||| || ||||| | |  |||||||| ||||||||||||||||||||||||||||    
T  23357661 ttaccaaattacccataaattcaagccttcaatttctctttctcacaacctttcttcc-tttcattacttcacatcacttcaacctt 23357746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 22477233 - 22477423
Alignment:
Q  33 agcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcattc 132  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22477233 agcttctacggcaaatcaaaatcacttttcaacctttaatttctcaagggacaagtacttacctaattacccctaaattcaagccttcaatttttctttc 22477332  T
Q  133 tcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  22477333 tcccagttttcttccttttcattacttcacatcacttcaaccttcaattttctgctacttgggaagattttgcaaatccaagctttcaatt 22477423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7386631 - 7386587
Alignment:
Q  1 caaacgcggtttggtttgacgctacaaatctgagcttctgcggca 45  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  7386631 caaacgcggtttggtttgaagctacaaatctgagcttctgcggca 7386587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39988704 - 39988660
Alignment:
Q  1 caaacgcggtttggtttgacgctacaaatctgagcttctgcggca 45  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  39988704 caaactcggtttggtttgaagctacaaatctgagcttctgcggca 39988660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 41741324 - 41741209
Alignment:
Q  62 caacctttaatttctcaaggtacaagtactt-acctaattacccctaaattcaagccttcaatttttcattc-tcctagttttcttccttttcattactt 159  Q
    |||||| ||||||||||||   || |||||| ||| |||||||| |||||||||||||||||||| || ||| | | |  |||||||| |||||||||||    
T  41741324 caacctataatttctcaagtggcaggtactttaccaaattacccataaattcaagccttcaatttctctttcttacaaactttcttcc-tttcattactt 41741226  T
Q  160 cacatcacttcaacctt 176  Q
    ||||||| |||||||||    
T  41741225 cacatcatttcaacctt 41741209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8049783 - 8049739
Alignment:
Q  1 caaacgcggtttggtttgacgctacaaatctgagcttctgcggca 45  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  8049783 caaactcggtttggtttgaagctacaattctgagcttctgcggca 8049739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 35574267 - 35574077
Alignment:
Q  33 agcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcattc 132  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35574267 agcttctacggcaaatcaaaatcacttttcaacctttaatttctcaagggacaagtacttacctaattacccctaaattcaagccttcaatttttctttc 35574168  T
Q  133 tcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  35574167 tcccagttttcttccttttcattacttcacatcacttcaaccttcaattttctgctacttgggaagattttgcaaatccaagctttcaatt 35574077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 35535482 - 35535575
Alignment:
Q  32 gagcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaattt 125  Q
    |||||||| |||||||| |||| ||  ||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  35535482 gagcttctacggcagatgaaaaccacgtttcagcctttaatttctcaagtgacaggtacttacctaattacccctaaattcaagccttcaattt 35535575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 292421 - 292336
Alignment:
Q  91 ttacctaattacccctaaattcaagccttcaatttttcattctc-ctagttttcttccttttcattacttcacatcacttcaacctt 176  Q
    ||||| |||||||| |||||||||||||||||||| || ||||| | |  ||||||||||| |||||||||||||||||||||||||    
T  292421 ttaccaaattacccataaattcaagccttcaatttctctttctcacaacctttcttccttt-cattacttcacatcacttcaacctt 292336  T

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Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 16543524 - 16543714
Alignment:
Q  33 agcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcattc 132  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  16543524 agcttctacggcagatcaaaaccacttttcaacctttaatttctcaagggacatgtacttacctaattacccctaaattcaagccttcaatttttctttc 16543623  T
Q  133 tcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  16543624 tcccagttttctttcttttcattacttcacatcacttcaaccttaaattttctgctacttcggaagattttgcaaatccaagctttcaatt 16543714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 17834612 - 17834422
Alignment:
Q  33 agcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcattc 132  Q
    |||||||  |||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||    
T  17834612 agcttctatggcagatcaaaaccacgtttcaacctttaatttctcaagggacaagtacttacctaattacccctaaattcaagccttcaatttctctttc 17834513  T
Q  133 tcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||  |||||||||||||||  || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  17834512 tcacagttttcttcctttttgtttcttcacatcacttcaaccttaaattttctgctacttgggaagattttacaaatccaagctttcaatt 17834422  T

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Target: scaffold0961 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 880 - 690
Alignment:
Q  33 agcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcattc 132  Q
    ||||||| |||| |||||||| ||  ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||    
T  880 agcttctacggctgatcaaaaccacgtttcaacctttaatttctcaagggacaggtacttacctaattacccctaaattcaagccttcaatttctctttc 781  T
Q  133 tcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||    
T  780 tcacaattttcttccttttcattacttcacatcacttcaaccttaaattttctgctacttcggaagattttacaaatccaagctttcaatt 690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 15606424 - 15606615
Alignment:
Q  32 gagcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcatt 131  Q
    |||||||| |||||||| |||| ||  ||||| ||||||||||||||||   || ||||||||||||||||| |||||||||||||||||| || || ||    
T  15606424 gagcttctacggcagatgaaaaccacgtttcagcctttaatttctcaagtggcaggtacttacctaattacctctaaattcaagccttcaaattctcttt 15606523  T
Q  132 ctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  15606524 ctcacagttttcttccttttcattacttcacatcacttcaaccttaaattttctactaattgtgaagattttgcatatccaagctttcaatt 15606615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 15606776 - 15606967
Alignment:
Q  32 gagcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcatt 131  Q
    |||||||| |||||||| |||| ||  ||||| ||||||||||||||||   || ||||||||||||||||| |||||||||||||||||| || || ||    
T  15606776 gagcttctacggcagatgaaaaccacgtttcagcctttaatttctcaagtggcaggtacttacctaattacctctaaattcaagccttcaaattctcttt 15606875  T
Q  132 ctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| || |||||||||||||    
T  15606876 ctcacagttttcttccttttcattacttcacatcacttcaaccttaaattttctactaattgtgaagattttgcatattcaagctttcaatt 15606967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 16561501 - 16561633
Alignment:
Q  91 ttacctaattacccctaaattcaagccttcaatttttcattctcctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgctat 190  Q
    ||||| |||||||| |||||||||||||||||| | || |||||  ||||||||||||||| |||||||||||||||||||| ||||||||||||||||     
T  16561501 ttaccaaattacccataaattcaagccttcaatctctctttctcacagttttcttcctttttattacttcacatcacttcaaacttaaattttctgctaa 16561600  T
Q  191 ttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||| |||||||||||| ||||||||||||||||    
T  16561601 ttgtgaagattttgcatatccaagctttcaatt 16561633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 28988004 - 28987914
Alignment:
Q  62 caacctttaatttctcaaggtacaagtactt-acctaattacccctaaattcaagccttcaatttttcattctc-ctagttttcttccttt 150  Q
    |||||||||||||||||||   || |||||| |||||||||||| |||||||||| || |||||| || ||||| | || |||||||||||    
T  28988004 caacctttaatttctcaagtggcaggtactttacctaattacccataaattcaagtctccaatttctctttctcacaagctttcttccttt 28987914  T

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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 23493415 - 23493607
Alignment:
Q  32 gagcttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaatttttcatt 131  Q
    |||||||| |||||||| |||| ||  ||| | ||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||| || ||    
T  23493415 gagcttctacggcagataaaaaccacgtttaagcctttaatttctcaagtggcaggtacttacctaattacccctaaattcaagccttcaatttctcttt 23493514  T
Q  132 ctcctagttttcttccttttcattacttcacatcac-ttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||| ||||||| ||||||||    
T  23493515 ctcatagttttcttccttttcattacttcacatcactttcaaacttaaattttctgctaattgtgaagattttgcatatccaagatttcaatt 23493607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 16250937 - 16250806
Alignment:
Q  91 ttacctaattacccctaaattcaagccttcaatttttcattctc-ctagttttcttccttttcattacttcacatcacttcaaccttaaattttctgcta 189  Q
    |||||||||||||  |||||||||||||||||||| || ||||| | | |||| |||||||  |||||||||||||||||||||||||||||||||| ||    
T  16250937 ttacctaattacctataaattcaagccttcaatttctctttctcacaactttttttccttta-attacttcacatcacttcaaccttaaattttctgtta 16250839  T
Q  190 tttgggaagattttgcaaatccaagctttcaatt 223  Q
     ||| |  ||||||||| || |||||||||||||    
T  16250838 -ttgtggtgattttgcatattcaagctttcaatt 16250806  T

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Target: scaffold1825 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1825
Description:

Target: scaffold1825; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 307 - 391
Alignment:
Q  137 agttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  || ||| |||||||||||| ||||||||||||||||    
T  307 agttttcttccttttcattacttcacatcacttcaaacttaaattttct--taattgtgaagattttgcatatccaagctttcaatt 391  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 37634515 - 37634599
Alignment:
Q  137 agttttcttccttttcattacttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttcaatt 223  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||  || ||| |||||||||||| ||||||||||||||||    
T  37634515 agttttcttccttttcattacttcacatcacttcaaacttaaattttct--taattgtgaagattttgcatatccaagctttcaatt 37634599  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 19095438 - 19095522
Alignment:
Q  41 cggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaattt 125  Q
    |||||||| |||| ||  ||||| ||||||||||||||||   || |||||||||||||||||| ||||||||||||||||||||    
T  19095438 cggcagatgaaaaccacgtttcagcctttaatttctcaagtggcaggtacttacctaattacccttaaattcaagccttcaattt 19095522  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 3750120 - 3750275
Alignment:
Q  60 ttcaacctttaatttctcaaggtacaag-tactt-acctaattacccctaaattcaagccttcaatttttcattctc-ctagttttcttccttttcatta 156  Q
    |||||||||||||||||||| ||   || ||||| |||||||||||  |||||| ||||||||||||| || ||||| | | |||||||  ||| | |||    
T  3750120 ttcaacctttaatttctcaaagtggtaggtactttacctaattacctataaatttaagccttcaatttctctttctcacaatttttctttgttt-cgtta 3750218  T
Q  157 cttcacatcacttcaaccttaaattttctgctatttgggaagattttgcaaatccaagctttc 219  Q
    ||||||||||||||||||||||||||||      ||| |||||||||||| ||||||||||||    
T  3750219 cttcacatcacttcaaccttaaattttc------ttgtgaagattttgcatatccaagctttc 3750275  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 36114732 - 36114643
Alignment:
Q  36 ttctgcggcagatcaaaatcatttttcaacctttaatttctcaaggtacaagtacttacctaattacccctaaattcaagccttcaattt 125  Q
    |||| |||||||| |||| ||  ||||| |||||||||| |||||   || | |||||||||||||||| ||||||||||||||||||||    
T  36114732 ttctacggcagatgaaaaccacgtttcagcctttaatttttcaagtggcaggcacttacctaattacccttaaattcaagccttcaattt 36114643  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 29022652 - 29022731
Alignment:
Q  97 aattacccctaaattcaagccttcaatttttcattctc-ctagttttcttccttttcattacttcacatcacttcaacctt 176  Q
    |||||||| |||||||||| ||||||||| || ||||| | |  ||||||||||| |||||||||||||||||||||||||    
T  29022652 aattacccataaattcaagtcttcaatttctctttctcacaacctttcttccttt-cattacttcacatcacttcaacctt 29022731  T

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