View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_high_86 (Length: 204)
Name: NF11787_high_86
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_86 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 12054025 - 12053850
Alignment:
| Q |
11 |
gagcagagatacaaatgatgagcttacgaatgcaactacgcacaagcaaatcaatattggctctctgagatatatgtgtgcaatacaaggccatatatat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12054025 |
gagcaaagatacaaatgatgagcttacgaatgcaactacgcacaagcaaatcaatattggctctctgagatatatgtgtgcaatacaaggccatatatat |
12053926 |
T |
|
| Q |
111 |
gtcaaagggttggtttagtaagtaggttcatgaagcaacttaaaacatgtcatctaatagcttctaagaaaaatat |
186 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12053925 |
gtcaaagagttggtttagtaagtaggttcatgaagcaacttaaaacatgtcatctaatagcttctaagaaaaatat |
12053850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University