View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_9 (Length: 629)
Name: NF11787_high_9
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_9 |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Complemental strand, 11269618 - 11269019
Alignment:
| Q |
17 |
catcagaggaaatggatcttggtggtcgagctttgcaagaacatgatgaatttagctggaccataaggcccaatttttggagcagcaactacatgaagtg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
11269618 |
catcagaggaaatggatcttggtggtcgagctttgcaagaacatgatgaatttagctggaccatgaggcccaatttttggagcagcaactatatgaagtg |
11269519 |
T |
|
| Q |
117 |
tacaatgaaatgggatagtataaggaagatttttgatgcatttgaggcttctagggacatagaacgttgtggcttacataggttgtgttcttggagggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11269518 |
tacaatgaaatgggatagtataaggaagatttttgatgcatttgaggcttctagggacatagaacgttgtggcttacataggttgtgttcttggagggtt |
11269419 |
T |
|
| Q |
217 |
acacaagatgggttttattttagtaatgatgaagtgaattggagaaaagatttcatatggtgagtgagtgtgtgatgccaaggttttctcctagcttgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11269418 |
acacaagatgggttttattttagtaatgatgaagtgaattggagaaaagatttcatatggtgagtgagtgtgtgatgccaaggttttctcctagcttgga |
11269319 |
T |
|
| Q |
317 |
ttcaccaaaccatgtttgctagttttagtaatctatttacaagagatgcaaggaagnnnnnnnnnnnnnnnnnaaataaggttaagataaaggttaggca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11269318 |
ttcaccaaaccatgtttgctagttttagtaatctatttacaagagatgcaaggaagttttttttttttttttttaataaggtcaagataaaggttaggca |
11269219 |
T |
|
| Q |
417 |
tcgggaggagtctgaagcattccaactaggttagcatccaacagaattatgcgaggaagtaattttgcataattataagagagtatatgctttgtaagat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11269218 |
tcgggaggagtctgaagcattccaactaggttagcacctaacagaattatgcgaggaagtaattttgcataattataagagagtatatgctttgtaagat |
11269119 |
T |
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| Q |
517 |
cataatatgcaccttttatgtgtagaatcatataaacatcttttaaggtgtatttagcgaaaacaacttaatcatcaag-----ggataaatgagtattc |
611 |
Q |
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|| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11269118 |
cacaatatccatcttttatgtgtagaatcatat-aacatcttttaaggtgtatttagcgaaaacaacttaatcatcaagtgtttggataaatgagtattc |
11269020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 11264275 - 11264032
Alignment:
| Q |
17 |
catcagaggaaatggatcttggtggtcgagctttgcaagaacatgatgaatttagctggaccataaggcccaatttttggagcagcaactacatgaagtg |
116 |
Q |
| |
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||||||| ||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||| ||||||||||| ||||| |||||| | |||||||| |
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| T |
11264275 |
catcagatgaaatggatcttggtagtcgagccatgcaagaacatgatgatttcagctggatcatgaggcccaatttgtggagtagcaaccatatgaagtg |
11264176 |
T |
|
| Q |
117 |
tacaatgaaatgggatagtataaggaagatttttgatgcatttgaggcttctagggacatagaacgttgtggcttacataggttgtgttcttggagggtt |
216 |
Q |
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||| ||||||| || | | |||||||| |||||||| ||| |||||||||||||| ||||||||||||| | ||||| | ||||||||||||||| |
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| T |
11264175 |
taccatgaaatatgacaacacaaggaagaaatttgatgcgtttaaggcttctagggacgcagaacgttgtggcacaaataggatatgttcttggagggtt |
11264076 |
T |
|
| Q |
217 |
acacaagatgggttttattttagtaatgatgaagtgaattggag |
260 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
11264075 |
acacaagatggattttatttcagtaatgatgaagtgaattggag |
11264032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 21862685 - 21862615
Alignment:
| Q |
392 |
ataaggttaagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
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|||||| ||||| ||||||| |||||| || || |||||||||||||||||||||| ||| || |||||| |
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| T |
21862685 |
ataaggctaagagaaaggttgggcatccgggagaatctgaagcattccaactaggttggcaccccacagaa |
21862615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 462
Target Start/End: Original strand, 21208589 - 21208644
Alignment:
| Q |
407 |
aggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
21208589 |
aggttgggcatcgggaggagtctgaagcatttcaactaggttggcacccaacagaa |
21208644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 17294065 - 17294003
Alignment:
| Q |
400 |
aagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
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|||| |||||||||| ||| || ||||||||||||||||||||||||| || ||||||||| |
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| T |
17294065 |
aagagaaaggttaggtatccgggcgagtctgaagcattccaactaggttgacacccaacagaa |
17294003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 19160562 - 19160500
Alignment:
| Q |
400 |
aagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
| |
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|||| |||||||||||||| ||| || |||||||||||||||||||||| ||| || |||||| |
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| T |
19160562 |
aagagaaaggttaggcatccggaagaatctgaagcattccaactaggttggcaccccacagaa |
19160500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 20759961 - 20759899
Alignment:
| Q |
400 |
aagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
| |
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|||| |||||||||||||| ||| || |||||||||||||||||||||| ||| || |||||| |
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| T |
20759961 |
aagagaaaggttaggcatccggaagaatctgaagcattccaactaggttggcaccccacagaa |
20759899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 462
Target Start/End: Original strand, 19407129 - 19407191
Alignment:
| Q |
400 |
aagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
| |
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||||| || ||||||||||||| ||| ||||||||| ||||||||||| ||| ||||||||| |
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| T |
19407129 |
aagatgaatgttaggcatcggggggaaactgaagcatcccaactaggttggcacccaacagaa |
19407191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 158808 - 158878
Alignment:
| Q |
392 |
ataaggttaagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacagaa |
462 |
Q |
| |
|
|||||| ||||| ||| |||||||||| ||| | |||||||||| |||||||||| ||||||||||||| |
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| T |
158808 |
ataaggctaagagaaaagttaggcatccggaaaaatctgaagcatctcaactaggttggcatccaacagaa |
158878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 5944 - 6005
Alignment:
| Q |
400 |
aagataaaggttaggcatcgggaggagtctgaagcattccaactaggttagcatccaacaga |
461 |
Q |
| |
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|||| ||||||| |||||| || ||||||||||||| ||||||||||| ||| |||||||| |
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| T |
5944 |
aagagaaaggttgggcatccgggagagtctgaagcatcccaactaggttggcacccaacaga |
6005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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