View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_10 (Length: 618)
Name: NF11787_low_10
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Original strand, 32643366 - 32643974
Alignment:
| Q |
1 |
ttaaagtccctttcaaatagccttggagtctgacacgttcctccacgaccacttactcaacaaatacaaattaatcaaatatgtctactcttttacacaa |
100 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643366 |
ttaaagttccttttaaatagccttggagtctgacacgttcctccacgaccacttactcaacaaatacaaattaatcaaatatgtctactcttttacacaa |
32643465 |
T |
|
| Q |
101 |
agtccgccacccccttcttccaaccaacccatctaatagttctattttccaacccgttaacccttcttcgagttttctccaattcgcttatcacattcct |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
32643466 |
agtcttccacccccttcttccaaccaacccatctaatagttatattttccaacccgttaacccttctttgagttttctccaattctcttatcacattcct |
32643565 |
T |
|
| Q |
201 |
tatggatgtgtaaaacgagaagtagaatagaagcaaagtgctcaaaaccaaattgataagaaccacccaccttgataaataacgacatttacac-aagaa |
299 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32643566 |
tatggatgtgtaaaatgagaagtagaatagaagcaaagtgctcaaaaccaaattgataagaaccacccaccttgataaataacgacatttacaccaagaa |
32643665 |
T |
|
| Q |
300 |
agtgtcatcttcaatgatttcactcttggtttccaggatgctagggttagctcccaatggaataccaagaaacataaagaaaaccatatgtgtatagtgc |
399 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32643666 |
agtctcatcttcaatgatttcactattggtttccaggatgctagggttagctcccaatggaataccaagaaacataaagaaaaccatatgtgtatagtgc |
32643765 |
T |
|
| Q |
400 |
atgaaaggaaatgggaatttgcctccataaacgaattttccaagtttagaccaaaagcttgcttttaataaagaaatttaccttcaattccgataccatt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32643766 |
atgaaaggaaatgggaatttgcctccataaacgaattttccaagtttagaccaaaagcttgcttttaataaagaaatttaccttcaattccgataccatt |
32643865 |
T |
|
| Q |
500 |
tcgaagcttctgaatactgatttgataatccataggttctcccatgtgctctcccccaataaaattgtatcatccacgtattggagagtgccgaatttta |
599 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
32643866 |
tcgaagcttctgaatactgatttgatactccatagattctcccatgtgctctcccccaataaaattgtatcatcaacgtattggagaatgccgaatttta |
32643965 |
T |
|
| Q |
600 |
agtcctatg |
608 |
Q |
| |
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||||||||| |
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| T |
32643966 |
agtcctatg |
32643974 |
T |
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