View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_12 (Length: 587)
Name: NF11787_low_12
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 31439773 - 31440343
Alignment:
| Q |
1 |
aggctttatcacatgtgagaggagaaattgaatttaaagacatatacttctgttatccatctaggccggattcaccagtcttgcaggaattcaatctcat |
100 |
Q |
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| T |
31439773 |
aggctttatcacatgtgagaggagaaattgaatttaaagacatatacttctgttatccatctaggccagattcaccagtcttgcaggaattcaatctcat |
31439872 |
T |
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| Q |
101 |
tattccagcaggtaagaggataggtcttgttgggggtagtggttcaggaaaatccactataattgcactgcttgaaaggttttatgaccctgtcgaggga |
200 |
Q |
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| T |
31439873 |
tattccagcaggtaagaggataggtcttgttgggggtagtggttcaggaaaatccactataattgcactgcttgaaaggttttatgaccctgtcgaggga |
31439972 |
T |
|
| Q |
201 |
gaaatattattggacggtcacaagattaatagacttcaattgaaatggttgagatctaaccttggcttagtgaatcaagagcctgttctttttgccacat |
300 |
Q |
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| T |
31439973 |
gaaatattattggacggtcacaagattaatagacttcaattgaaatggttgagatctaaccttggcttagtgaatcaagagcctgttctttttgccacat |
31440072 |
T |
|
| Q |
301 |
ccataaaagagaatatattgtttggaaaagaaggtgcttcaatggaaagtgtgataagtgcagctaaatcagcaaatgcacatgatttcattgtcaaatt |
400 |
Q |
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| T |
31440073 |
ccataaaagagaatatattgtttggaaaagaaggtgcttcaatggaaagtgtgataagtgcagctaaatcagcaaatgcacatgatttcattgtcaaatt |
31440172 |
T |
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| Q |
401 |
gccagatggatatgaaactcaagtaagttgaaaaaagagaactattatataaacttgttttaattggagtcaaatttctaagtagcttcatatttaaaag |
500 |
Q |
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| T |
31440173 |
accagatggatatgaaactcaagtaagttggaaaaagaaaactattatataaacttgttttaattggagtcaaatttctaagtagcttcatatttaaaag |
31440272 |
T |
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| Q |
501 |
tttcaaataattagtataagctgagtatatctatcaaatagtttgacctttaacttaagccttattattga |
571 |
Q |
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| T |
31440273 |
tttcaaataattagtataagctgagtatatctatcaaatagtttgacctttaacttaagccttattattga |
31440343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 273 - 427
Target Start/End: Original strand, 39155325 - 39155479
Alignment:
| Q |
273 |
aatcaagagcctgttctttttgccacatccataaaagagaatatattgtttggaaaagaaggtgcttcaatggaaagtgtgataagtgcagctaaatcag |
372 |
Q |
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| T |
39155325 |
aatcaagagccaattctatttgcaacttccataagagagaacattctatttggaaaggaaggagcttcaatggaagatgtcataaccgcagcaaaagcag |
39155424 |
T |
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| Q |
373 |
caaatgcacatgatttcattgtcaaattgccagatggatatgaaactcaagtaag |
427 |
Q |
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| T |
39155425 |
cgaatgcacatgatttcattgtcaaacttccaaatggctatgaaactcaagtaag |
39155479 |
T |
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