View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_13 (Length: 573)
Name: NF11787_low_13
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 52771165 - 52771717
Alignment:
| Q |
1 |
accaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagttccgacagcattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771165 |
accaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagttccgacagcattca |
52771264 |
T |
|
| Q |
101 |
ttgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgttaatgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771265 |
ttgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgttaatgcc |
52771364 |
T |
|
| Q |
201 |
agtaaactgttggaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaaatttgacattcatatttttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771365 |
agtaaactgttggaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaaatttgacattcatatttttc |
52771464 |
T |
|
| Q |
301 |
tgtctgtcttgttctgcctcagctgttagaaaatcaacttcgtcttcaagacgagccaagtcatagatgttggaaatgacatcaacagcttcattctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771465 |
tgtctgtcttgttctgcctcagctgttagaaaatcaacttcgtcttcaagacgagccaagtcatagatgttggaaatgacatcaacagcttcattctttc |
52771564 |
T |
|
| Q |
401 |
tattcttcataaaaagccatcttggtgattcagggaggaaaagcatgagaatgaattgaacaagtgcagggacagctgaaacacccaacatccaacgcca |
500 |
Q |
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| T |
52771565 |
tattcttcataaaaagccatcttggtgattcagggaggaaaagcatgagaatgaattgaacaagtgcagggacagctgaaacacccaacatccaacgcca |
52771664 |
T |
|
| Q |
501 |
agtaccagggacacgcgtaaaggcgaggttaactatgtaggaaaggagttgtc |
553 |
Q |
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| T |
52771665 |
agtaccagggacacgcgtaaaggcgaggttaactatgtaggaaaggagttgtc |
52771717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 52767225 - 52767403
Alignment:
| Q |
16 |
actcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaaga |
115 |
Q |
| |
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||||||||||||||| | || |||||| | |||| |||||||| ||||| ||||||||||||||||| |||||| ||||||||| ||||||| | || |
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| T |
52767225 |
actcctcctaagctatacagggctaattttttccgtcctgcatggtcaataaggtaaataccaagaactgttccggcagcattcaagccagcaactatga |
52767324 |
T |
|
| Q |
116 |
gtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgtt |
194 |
Q |
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| T |
52767325 |
gagagagttgaagagccaactcattagagtgaaagccagccatttggacaattgttggactgtagtacatcactgtgtt |
52767403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 392587 - 392439
Alignment:
| Q |
61 |
tcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccattt |
160 |
Q |
| |
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||||| |||||||| ||||||| ||||||||||| ||||| ||||||| | ||| || | |||||||||||| || | || || |||||||||| |
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| T |
392587 |
tcaataaggtaaatgccaagaattgttccgacagcgttcatgccagcaactatgagggacagaagaagagccaactgattggcatggaagccagccattt |
392488 |
T |
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| Q |
161 |
gaacaatggttggactgtagtacatcactgtgttaatgccagtaaactg |
209 |
Q |
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|||||||||||||||||||||||||||| ||||| || || |||||||| |
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| T |
392487 |
gaacaatggttggactgtagtacatcaccgtgtttatacctgtaaactg |
392439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 500
Target Start/End: Complemental strand, 390814 - 390723
Alignment:
| Q |
409 |
ataaaaagccatcttggtgattcagggaggaaaagcatgagaatgaattgaacaagtgcagggacagctgaaacacccaacatccaacgcca |
500 |
Q |
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||||| ||||||||||| ||||| |||||||| |||||| |||||| || | ||||||||| ||| |||||||||| | |||||| ||||| |
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| T |
390814 |
ataaatagccatcttggagattcggggaggaagagcatgcaaatgaactggataagtgcaggcacacctgaaacaccaagcatccatcgcca |
390723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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