View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_15 (Length: 562)
Name: NF11787_low_15
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 49552724 - 49553270
Alignment:
| Q |
1 |
tctacatgaaatatatgttggttcagcaggttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacac |
100 |
Q |
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| T |
49552724 |
tctacatgaaatatatgttggttcagcaggttcaatattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacac |
49552823 |
T |
|
| Q |
101 |
aaagtctgaacattgtagcaatgtttttgaagcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatct |
200 |
Q |
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| T |
49552824 |
aaagtctgaacattgtagcaatgtttttgaagcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatct |
49552923 |
T |
|
| Q |
201 |
cttgttcttgcagtgttatgtttttaccatgtcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttct |
300 |
Q |
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| T |
49552924 |
cttgttcttgcagtgttatgtttttaccatgtcttccatgttgacagtaacagaagataagctttatgcattcaatgattgataatggagtaggttttct |
49553023 |
T |
|
| Q |
301 |
tgtcttccacgtgcctttggaatttccattcatttatataaatttagatactcgcg---nnnnnnnnntcattgtaaatacatgaaactcaagcattgac |
397 |
Q |
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| T |
49553024 |
tgtcttccacgtgcctttggaatttccattcattt------atttagatacttgcgagaaaaaaaaaatcattgtaaatacatgaaactcaagcattgac |
49553117 |
T |
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| Q |
398 |
tacgactgtgctcttttaaacaggacattatattttcccaagcagaacacattctagattgtgcatgaaaacatcgatgaagagatagagggggtccaga |
497 |
Q |
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| T |
49553118 |
tacgaccgtg--cttttaaataggacattatatcttcccaagcagaacacattctagattgtgcatgaaaacttcgatgaagagatagagggggtccaga |
49553215 |
T |
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| Q |
498 |
acaatgagagatgggcttatgtgaaggttacattggacaaaaatgttcttctcac |
552 |
Q |
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| T |
49553216 |
acaatgagagatggggttatgtgaaggttaacatggagaaaaatgttcttctcac |
49553270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 134 - 328
Target Start/End: Original strand, 49537536 - 49537730
Alignment:
| Q |
134 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtc |
233 |
Q |
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| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttaccatgtc |
49537635 |
T |
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| Q |
234 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttcca |
328 |
Q |
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| T |
49537636 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttggaatttcca |
49537730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 448 - 527
Target Start/End: Original strand, 49538498 - 49538578
Alignment:
| Q |
448 |
attctagat-tgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
527 |
Q |
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| T |
49538498 |
attctagatctgtccatgaaaactttgatgaagagatagagggagtacagagcaatgagagatgggcttatgtgaaggtta |
49538578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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