View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_16 (Length: 550)
Name: NF11787_low_16
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 34687193 - 34686690
Alignment:
| Q |
18 |
catgtgcatcatattcatcgcttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttcattgttcatgatgtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687193 |
catgtgcatcatattcatcgcttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttcattgttcatgatgtta |
34687094 |
T |
|
| Q |
118 |
tcataattcagcagaggcagatcaacattttgttgaggtgagggttcaatcatattcgggaaatcagagaagtaattagacccctctagtgttgtcatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687093 |
tcataattcagcagaggcagatcaacattttgttgaggtgagggttcaatcatattcgggaaatcagagaagtaattagacccctctagtgttgtcatgt |
34686994 |
T |
|
| Q |
218 |
cattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtgaggata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34686993 |
cattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtcaggata |
34686894 |
T |
|
| Q |
318 |
agtatcatcttggttttggttcagagagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagaggaa |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686893 |
agtatcatcttggttttggttcagagagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagaggaa |
34686794 |
T |
|
| Q |
418 |
gatgatgaagatgagttgggtggtggtgtgttgatttgtgggagagagttattagaagctggatctgcaattggttgtctttttgatttcttggggtagg |
517 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686793 |
gatgatgaagatgagttgggtggtggtgtggtgatttgtgggagagagttattaagagctggatctgcaattggttgtctttttgatttcttggggtagg |
34686694 |
T |
|
| Q |
518 |
gtgc |
521 |
Q |
| |
|
|||| |
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|
| T |
34686693 |
gtgc |
34686690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 478
Target Start/End: Complemental strand, 34695115 - 34694659
Alignment:
| Q |
22 |
tgcatcatattcatcgcttcctcttgaatattctcttgataaaaaagatcatggactgagtagattccattttcattttcattgttcatgatgttatcat |
121 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||| |||||| |||| || |||| |||||||||||| ||| ||| ||||||||||||||||| |
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| T |
34695115 |
tgcatcatatgaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcat |
34695016 |
T |
|
| Q |
122 |
aattcagcagaggcagatcaacattttgttgaggtgagggttcaatcatattcgggaaatcagagaagtaattagacccctctagtgttgtcatgtcatt |
221 |
Q |
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|||| || ||||||||||||||||||| ||||||| | | || | ||||||| || ||| |||||||||||||| |||||||| | ||| |||||||||| |
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| T |
34695015 |
aattaagtagaggcagatcaacattttcttgaggtaaagattgactcatatttggaaaaccagagaagtaattaaacccctctggcgttatcatgtcatt |
34694916 |
T |
|
| Q |
222 |
aagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtgtgaggataagta |
321 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
34694915 |
aagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtgtaggtagttgtagaccggttccagtgagggtgtgaggataagta |
34694816 |
T |
|
| Q |
322 |
tcatcttggttttggttcagagagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggagattccaataatattgttagaggaagatg |
421 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694815 |
tcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatcccatcattaatattggagattccaataatattgttagaggaagatg |
34694716 |
T |
|
| Q |
422 |
atgaagatgagttgggtggtggtgtgttgatttgtgggagagagttattagaagctg |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
34694715 |
atgaagatgagttgggtggtggtgtgttgatttgtgggagagagctatttgaagctg |
34694659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 34682533 - 34682493
Alignment:
| Q |
428 |
atgagttgggtggtggtgtgttgatttgtgggagagagtta |
468 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |
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| T |
34682533 |
atgagttgggtggtggtgtgaggatttgtggaagagagtta |
34682493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 394
Target Start/End: Complemental strand, 8284874 - 8284693
Alignment:
| Q |
210 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcagcgagggtg |
309 |
Q |
| |
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||||||| ||||| ||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||| | ||||| ||| |||| |
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| T |
8284874 |
tgtcatggcattaggcactac---ttcattaatatgattctgcacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggttccagtaggggtt |
8284778 |
T |
|
| Q |
310 |
tgaggataagtatcatcttggttttggttcagagagattgcaggtgaattaggcaccatcaccgtcccatcattaatattggaga |
394 |
Q |
| |
|
||| ||||| |||| ||||||||||||||| |||| ||| |||||||||| | || |||| ||||||||||| |||||||| |
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| T |
8284777 |
tgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatcccatcattagcattggaga |
8284693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 8285093 - 8285050
Alignment:
| Q |
18 |
catgtgcatcatattcatcgcttcctcttgaatattctcttgat |
61 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| |||||||||| |
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|
| T |
8285093 |
catgtgaatcatattcattgcttcctcttgaatcttctcttgat |
8285050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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