View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_18 (Length: 546)
Name: NF11787_low_18
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 26766540 - 26766256
Alignment:
| Q |
1 |
aaataagcataatatacagacatcatgtaaaagca---tactaagtagtagtatgaacggcagccacagtagaaaccatagagtccactccgcagatatt |
97 |
Q |
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|||||| || ||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26766540 |
aaataaacagaatatacagacatcatggaaaagcaaactactaggtagtagtatgaacggcagccacagtagaaaccatagagtccactccgcagatatt |
26766441 |
T |
|
| Q |
98 |
tcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttttaattatccaatatggcttctccttcaacctaataggcgaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26766440 |
tcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttttaattatccaatatggcttctccttcaacctaataggcgaa |
26766341 |
T |
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| Q |
198 |
taggctccagatccatatcccaccagtaacactccatgatctagtctctttgagcatatgtatgggcacgatactcctccaacgt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
26766340 |
taggctccagatccatatcccaccagtaacactccatgatctagtctctttgagcatatgtatggacatgatactcctccaacgt |
26766256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 286 - 498
Target Start/End: Original strand, 26766800 - 26767009
Alignment:
| Q |
286 |
cacgaattttttgtttgttttcaaattcagcatgaaacaatgatgacgcattatatttgctagaactattttataccgacaataaactgtcaccttggag |
385 |
Q |
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| T |
26766800 |
cacgatttttttttttgttttcaaattcagcatgaaa---tgatgacgcattatattttctagaactattttataccgacaataaactgtcaccttggag |
26766896 |
T |
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| Q |
386 |
tgtgtaatgacttgaaagttgaaacaaacaaccccacgagcttattgataaatctacaaaataaaataaatacaaattatatttataaggatggatgaaa |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26766897 |
tgtgtaatgacttgaaagttgaaacaaacaaccccacgagcttattgataaatctacaaaataaaataaataaaaattatatttataaggatggatgaaa |
26766996 |
T |
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| Q |
486 |
atagtgaaattga |
498 |
Q |
| |
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||||||||||||| |
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| T |
26766997 |
atagtgaaattga |
26767009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 27437169 - 27437028
Alignment:
| Q |
41 |
agtagtagtatgaacggcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtc |
140 |
Q |
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||||||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || |||||||| || |||||||| ||| |
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| T |
27437169 |
agtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaggtc |
27437070 |
T |
|
| Q |
141 |
tcaccccatgagtttttaattatccaatatggcttctccttc |
182 |
Q |
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| T |
27437069 |
tcaccccacgagtttttaacgatccaatacggcttctccttc |
27437028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 27549076 - 27549201
Alignment:
| Q |
57 |
gcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttt |
156 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| ||| ||| |
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| T |
27549076 |
gcagccacagtagaaaccattgagtccactccacagatatttcgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagcttt |
27549175 |
T |
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| Q |
157 |
taattatccaatatggcttctccttc |
182 |
Q |
| |
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||| |||||||| |||||||||||| |
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| T |
27549176 |
taacaatccaatacggcttctccttc |
27549201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 27945645 - 27945520
Alignment:
| Q |
57 |
gcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttt |
156 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||| || || |||||||| || |||||||| ||||||||||| ||||||| |
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| T |
27945645 |
gcagccacagtagaaaccattgagtccactccacagatatttcgtcccctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttt |
27945546 |
T |
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| Q |
157 |
taattatccaatatggcttctccttc |
182 |
Q |
| |
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||| |||||||| |||||||||||| |
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| T |
27945545 |
taacgatccaatacggcttctccttc |
27945520 |
T |
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