View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_low_21 (Length: 523)
Name: NF11787_low_21
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 45497575 - 45497314
Alignment:
| Q |
7 |
agcagcacagacactctaatgataccgtacttaacactctttagaatagctataaaactcataattgagaaacaaagtttcttcctcaatttaaccacgt |
106 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45497575 |
agcagctcaaacactctaatgataccgtacttaacactctttagaatagctatgaaactcaaaattgagaaacaaagtttcttcctcaatttaaccacgt |
45497476 |
T |
|
| Q |
107 |
gaaagaacgaaagaaaaagggaatcattattaagaactaaacacctataccttggctaactttgaatttccacaacaaaagataacattcctctaagaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45497475 |
gaaagaacgaaagaaaaagggaatcattattaagaactaaacacctataccttggctaactttgaatttccacaacaaaagataacattcctctaagaat |
45497376 |
T |
|
| Q |
207 |
ctttgttcaatttgaaagcaataaaggcactgcttgt-aattcagttaccattcctaaatca |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
45497375 |
ctttgttcaatttgaaagcaataaaggcactgcttgtaaattcagttaccattcccaaatca |
45497314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 265 - 507
Target Start/End: Complemental strand, 45497290 - 45497048
Alignment:
| Q |
265 |
tcatgcctcattttcaagaataaacattttaaataaactgtgcataaatttctgcctataaagattgtgtttgtgacaaaaatgtagatggttttagtat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45497290 |
tcatgcctcattttcaagaataaacattttaaataacctgtgcataaatttgtgcctataaagattgtgtttgtgacaaaaatgtagatggttttagtat |
45497191 |
T |
|
| Q |
365 |
attcattggatagtttaacaaaattgtcatcatgaaggtgcaatgtagattcaaaatttcatcacttagttaaaatcaattaatatcatacgagaatttt |
464 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45497190 |
attcgttggatagtttaacaaaaatgtcatcatgaaggtgcaatgtagattcaaaatttcatcacttagttaaaatcaattaatatcatacgagaatttt |
45497091 |
T |
|
| Q |
465 |
ccttgcttccatttatgttgcaaaaggtattcaacgtcaaacc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45497090 |
ccttgcttccatttatgttgcaaaaggtattcaacgtcaaacc |
45497048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University