View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_22 (Length: 520)
Name: NF11787_low_22
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 2022187 - 2022679
Alignment:
| Q |
18 |
agtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctgaggtgaaaagagaattatacacacgtgatccagtgaagcct |
117 |
Q |
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| T |
2022187 |
agtgagtgttttagatgagatgaagaatggagtggttagattctttgagcaagattctgaggtgaaaagagaattatacacacgtgatccagtgaagcct |
2022286 |
T |
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| Q |
118 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggataccttttactgttttatggctccgaattctcctaatccagaag |
217 |
Q |
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| T |
2022287 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggataccttttactgttttatggctccgaattctcctaatccagaag |
2022386 |
T |
|
| Q |
218 |
atttaccatcagtatgcaggtatgttagatgcaatatttaannnnnnnagattaactattgcacaagcatagtgattataggaacaaataagacatcatg |
317 |
Q |
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| T |
2022387 |
atttaccatcagtatgcaggtatgttagatgcaatatttaatttttttagattaactattgcacaagcatagtgattataggaacaaataagacatcatg |
2022486 |
T |
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| Q |
318 |
attgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatgtggtggctaagattgcgggtgattaggattagactattttg |
417 |
Q |
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| T |
2022487 |
attgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatgtggtggccaagattgcgggtgattaggattagactattttg |
2022586 |
T |
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| Q |
418 |
atatcatcttgaatttatttgactatatttacaaaattatccctaaattatgtcccgcgcttgagcgacttgtccacttatcggtaacctatg |
510 |
Q |
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| T |
2022587 |
atattatcttgaatttatttgactatatttacaaaattatccctaaattatgtcccgcgcttgagcgacttgtccacttatcggtaacctatg |
2022679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 2032973 - 2033010
Alignment:
| Q |
121 |
gtttataatagtaattttgatctttatagttcaccagc |
158 |
Q |
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| T |
2032973 |
gtttataatagtaattttgatatttatagctcaccagc |
2033010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 28736679 - 28736621
Alignment:
| Q |
118 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
176 |
Q |
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| T |
28736679 |
ttggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac |
28736621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 28743305 - 28743247
Alignment:
| Q |
118 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
176 |
Q |
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| T |
28743305 |
ttggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatac |
28743247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 28786309 - 28786194
Alignment:
| Q |
43 |
aatggagtggttagattctttgagcaagattctgaggtgaaaagagaattatacacacgtgatccagtgaagcctttggtttataatagtaattttgatc |
142 |
Q |
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| T |
28786309 |
aatggagtgattagattctttgaacaagatgttgaagtgaaaaaagagttatattctcgtgatccaatgaggccattttcatacaatagcaattttaatc |
28786210 |
T |
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| Q |
143 |
tttatagttcaccagc |
158 |
Q |
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||||||||||| |||| |
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| T |
28786209 |
tttatagttcatcagc |
28786194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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