View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_23 (Length: 518)
Name: NF11787_low_23
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 34375965 - 34375764
Alignment:
| Q |
19 |
tattgtttccccaaaaggcatgtttcttgtcatgcaatatccaatcaacactcgcaatgtcgtaagttccaacttccaagtggacgaagttggctatgat |
118 |
Q |
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| T |
34375965 |
tattgtttccccaaaaggcatgtttcttgtcatgcaatatccaatcaacactcgcaatgtcgtaggttccaacttccaagtggacgaagttggctatgat |
34375866 |
T |
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| Q |
119 |
atatcgttatatcaatacatagaatcgagttagataagaatcaaatattccgacgcagaaactgagctatgttgttacaatcaaagaacataaatcacaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
34375865 |
atatcgttatatcaatacatagaatcgagttagataagaatcaaatattccgacgcagaaactgagcta---ttttacaatcaaagaacataaatcacaa |
34375769 |
T |
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| Q |
219 |
acact |
223 |
Q |
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||||| |
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| T |
34375768 |
acact |
34375764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 49340440 - 49340369
Alignment:
| Q |
313 |
ttggatatattttttctagatggcagtcatctatctattaaacaggagtaaatggagttaagctaaatggag |
384 |
Q |
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| T |
49340440 |
ttggatttaatttttccacatggcagtcatctatgtattaaacaagagtaaatggagtcaagcaaaatggag |
49340369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 27617154 - 27617195
Alignment:
| Q |
147 |
gttagataagaatcaaatattccgacgcagaaactgagctat |
188 |
Q |
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| T |
27617154 |
gttagataagaatcaaatacttctacgcagaaactgagctat |
27617195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 34505939 - 34505980
Alignment:
| Q |
147 |
gttagataagaatcaaatattccgacgcagaaactgagctat |
188 |
Q |
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| T |
34505939 |
gttagataagaatcaaatacttctacgcagaaactgagctat |
34505980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 14209873 - 14209925
Alignment:
| Q |
332 |
atggcagtcatctatctattaaacaggagtaaatggagttaagctaaatggag |
384 |
Q |
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||||||||||||| | ||||||| |||||||||||||||||||| |||||||| |
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| T |
14209873 |
atggcagtcatctgtgtattaaaaaggagtaaatggagttaagcaaaatggag |
14209925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 2924604 - 2924668
Alignment:
| Q |
320 |
tattttttctagatggcagtcatctatctattaaacaggagtaaatggagttaagctaaatggag |
384 |
Q |
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||||||||| | ||||||||||||| | ||||||| ||||||||||||||||||| |||||||| |
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| T |
2924604 |
tattttttccacatggcagtcatctgtgtattaaaaaggagtaaatggagttaagtaaaatggag |
2924668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 2924503 - 2924432
Alignment:
| Q |
313 |
ttggatatattttttctagatggcagtcatctatctattaaacaggagtaaatggagttaagctaaatggag |
384 |
Q |
| |
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|||||| | ||||||| | ||| ||||||||| | ||||||| |||||||||||||||||||| |||||||| |
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| T |
2924503 |
ttggatttgttttttccacatgacagtcatctgtgtattaaaaaggagtaaatggagttaagcaaaatggag |
2924432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 31485466 - 31485412
Alignment:
| Q |
320 |
tattttttctagatggcagtcatctatctattaaacaggagtaaatggagttaag |
374 |
Q |
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||||||||| | ||| ||||||||| | ||||||| ||||||||||||||||||| |
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| T |
31485466 |
tattttttccacatgacagtcatctgtgtattaaaaaggagtaaatggagttaag |
31485412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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