View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_24 (Length: 517)
Name: NF11787_low_24
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 6 - 499
Target Start/End: Original strand, 218904 - 219397
Alignment:
| Q |
6 |
aggagcagagatagatccttcatggtacgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgac |
105 |
Q |
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| T |
218904 |
aggagaagacatagatccttcatggtacgaacaagataacacaacatgtaatctttcacatgaagagttagaagaaatcaaaaagcttcattcaagtgac |
219003 |
T |
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| Q |
106 |
acaaacattgacaaagaaaaagattcaattgaattagtcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaag |
205 |
Q |
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| T |
219004 |
acaaacattgacaaagaaaaagattcaattgaattaatcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaag |
219103 |
T |
|
| Q |
206 |
tccttaatgttgcatgtggaggtaccctttatagggacgtatcaaaagagctttcaaaaaatagccatgtgatgcatataaactatgatgattatgatgg |
305 |
Q |
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| T |
219104 |
tccttaatgttgcatgtggaggtaccctttatagggacgtatcaaaagagctttcaaaaaatagccatgtgatgcatataaactatgatgattatgatgg |
219203 |
T |
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| Q |
306 |
tcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaaatgaaggaatggatgagattttggttaatagc |
405 |
Q |
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| T |
219204 |
tcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaaatgaaggaatggatgagattttggttaatagc |
219303 |
T |
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| Q |
406 |
tatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggtttaattgaagggttttatgacccttatg |
499 |
Q |
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| T |
219304 |
tatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggtttaattgaagggttttatgacccttatg |
219397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 274 - 495
Target Start/End: Complemental strand, 31652031 - 31651813
Alignment:
| Q |
274 |
gtgatgcatataaactatgatgattatgatggtcatagacatgttattaaggttgttaaaaacacacctttgtttgattggtttaaggattctttgaaaa |
373 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| | || |||||| |||| ||||||||| | |||||||||||||||||||| || |
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| T |
31652031 |
gtgatgcatattaactatgatgattatgatggtcatagacatgaggtaaaagttgttgaaaatacacctttgcatcattggtttaaggattctttggaag |
31651932 |
T |
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| Q |
374 |
atgaaggaatggatgagattttggttaatagctatcatcatcaaggggttaagagattggcacaacgttttgttccaatggcttttgctaatgatggttt |
473 |
Q |
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| T |
31651931 |
atgataaaatggac---attttggttaatagctatcatcatcaaggtgttaagagacttgcacagcgttttgttccaatggcttttgctcctgatggttt |
31651835 |
T |
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| Q |
474 |
aattgaagggttttatgaccct |
495 |
Q |
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| T |
31651834 |
gattgaagggttttatgaccct |
31651813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 112 - 230
Target Start/End: Complemental strand, 31652208 - 31652090
Alignment:
| Q |
112 |
attgacaaagaaaaagattcaattgaattagtcttagcaaagctttgtcttgaaagaaacattccttacttaggaatttgtagaggttcacaagtcctta |
211 |
Q |
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||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||| | |
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| T |
31652208 |
attgacaaagaaaaagattcaattgaattagcactagccaaactttgtcttgaaagaaatattccttacttgggaatttgtagagggtcacaactcctaa |
31652109 |
T |
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| Q |
212 |
atgttgcatgtggaggtac |
230 |
Q |
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|||| |||||||||||||| |
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| T |
31652108 |
atgtggcatgtggaggtac |
31652090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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