View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_27 (Length: 481)
Name: NF11787_low_27
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 4143470 - 4143013
Alignment:
| Q |
19 |
tatgcttcatactttcagttatttacttctttgtcctcaacaatatacatatgactagaggaaaattaaatatatgtcatgttccatat-----ttgatc |
113 |
Q |
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| T |
4143470 |
tatgcttcatactttcagttattcacttctttgtcctcaacattatacatatgactagaggaaaattaaatatatgtcatgttccatatgaaatttgatc |
4143371 |
T |
|
| Q |
114 |
taatgattagtataatatttcaggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaa |
213 |
Q |
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| T |
4143370 |
taatgattagtataatatttcaggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaa |
4143271 |
T |
|
| Q |
214 |
atggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcag |
313 |
Q |
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| T |
4143270 |
atggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcag |
4143171 |
T |
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| Q |
314 |
gctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgcc |
413 |
Q |
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| T |
4143170 |
gctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgcc |
4143071 |
T |
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| Q |
414 |
gaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttg |
471 |
Q |
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| T |
4143070 |
gaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttg |
4143013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 134 - 285
Target Start/End: Complemental strand, 4138604 - 4138453
Alignment:
| Q |
134 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaat |
233 |
Q |
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| T |
4138604 |
caggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctat |
4138505 |
T |
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| Q |
234 |
atccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
285 |
Q |
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| T |
4138504 |
atcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
4138453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 4129811 - 4129737
Alignment:
| Q |
211 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
285 |
Q |
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| T |
4129811 |
aaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
4129737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 4130450 - 4130402
Alignment:
| Q |
134 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataa |
182 |
Q |
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| T |
4130450 |
caggaccaatgtactataaaggagtttaccatttattctaccaatataa |
4130402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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