View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_28 (Length: 480)
Name: NF11787_low_28
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 45347358 - 45347821
Alignment:
| Q |
1 |
agggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacactacaaataaaacctttgcttgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45347358 |
agggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacgctacaaataaaacctttgcttgtc |
45347457 |
T |
|
| Q |
101 |
aacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctccctcccaacccgaggattcaaatatttacctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
45347458 |
aacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctcccccccaacccgaggattcaaatatttaactgt |
45347557 |
T |
|
| Q |
201 |
caactttctataacaaccacctgaaataaccgaattctggtgggctcattgttcaa---tattgtttcattttccaattttggattattatttgatggta |
297 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
45347558 |
caactttctataacaaccacctgaaataaccgaactctggtgggctcattgttcaatattattgtttcattttccaatttttaattattatttgatggta |
45347657 |
T |
|
| Q |
298 |
gttaatcatgaatcattttgacttgtttctattttttgcagtgt-nnnnnnnnnnnnnnnnnttaacttaagggagagggagagagatatatggtaggtt |
396 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45347658 |
gttaatcatgaatcattctgacttgtttctattttttgcagtgtaaaaggaaaaagaaaaaattaacttaagggagagggagagagatatatggtaggtt |
45347757 |
T |
|
| Q |
397 |
cgacacataacggagggggagatagcggtaagtcattgatggaagacctcctcggacttctaag |
460 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45347758 |
cgacacataacggagggggagatagcggtaagtcattgatggaagacctcctcggacttctaag |
45347821 |
T |
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