View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_29 (Length: 468)
Name: NF11787_low_29
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 30314127 - 30314566
Alignment:
| Q |
19 |
agcattgcttatttagctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314127 |
agcattgcttatttggctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggc |
30314226 |
T |
|
| Q |
119 |
gttgttactttttctcatatcattctcagtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314227 |
gttgttactttttctcatatcattctcagtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagca |
30314326 |
T |
|
| Q |
219 |
tatcacaatatagaaattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30314327 |
tatcacaatatagaaattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaaacggaattgactaattataactgcatgca |
30314426 |
T |
|
| Q |
319 |
caattttaaaccatctatacatttataaccacgttttcttttctactttttcctcgatctcttaccatttatcattgttcttcctttcgaacagtctttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314427 |
caattttaaaccatctatacatttataaccacattttcttttctactttttcatcgatctcttaccatttatcattgttcttcctttcgaacagtctttc |
30314526 |
T |
|
| Q |
419 |
tcattgtctggaaatcaaaaccaacaatccttcttctctg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30314527 |
tcattgtctggaaatcaaaaccaacaatccttcttctctg |
30314566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 30290569 - 30290902
Alignment:
| Q |
19 |
agcattgcttatttagctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggc |
118 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||| |
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|
| T |
30290569 |
agcattgcttatttggctaaccgagctgacaacgaggaccttagagtattagatcttgccatccccgttaacaggcctggtcaatttcaggtaaaatggc |
30290668 |
T |
|
| Q |
119 |
gttgttactttttctcatatcattctcagtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagca |
218 |
Q |
| |
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||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||| || |||||||||| || |||||| ||||||| || |
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|
| T |
30290669 |
attgttactttttctcatatcactcccagtcatgtatacat-attacat-------ttttaaattgcggtatgcaacagcatctagagacctctacaaca |
30290760 |
T |
|
| Q |
219 |
tatcacaatatagaaattgacaccgcattggtttcattttcgcacattttatcttaatataaatgtttaaatcggaattgactaattataactgcatgca |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
30290761 |
tatcacaatatagaaattgataccgcattggtctcatcttcgcacatttgatcttatattaaatgtttgtaacggaattgactaattataactgcatgca |
30290860 |
T |
|
| Q |
319 |
caattttaaaccatctatacatttataaccacgttttctttt |
360 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||| ||||||||| |
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|
| T |
30290861 |
caatttaaaaccatctatacatatatatccacattttctttt |
30290902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 177 - 458
Target Start/End: Original strand, 30303388 - 30303678
Alignment:
| Q |
177 |
ttaaactgtggtatgcaacggcgcctagaggtctctacagcatatcacaatatagaaattgacaccgcattggtttcattttcgcacattttatcttaat |
276 |
Q |
| |
|
||||| || |||||||||| || ||||| |||| |||| |||||||||||| ||||||||| ||||||||||| |||||||| || ||| ||||||||| |
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|
| T |
30303388 |
ttaaattgcggtatgcaacatcgtctagatgtctgtacaacatatcacaatagagaaattgataccgcattggtctcattttctcatattctatcttaat |
30303487 |
T |
|
| Q |
277 |
ataaatgtttaaatcggaattgactaattataactgcatgcacaattttaaaccatctatacatttataaccacgttttcttttctactttttcctcgat |
376 |
Q |
| |
|
|||||||| | | || |||||||||||||||||||||||||||||| |||||||||| |||| |||| |||| ||||||||||| |||||| ||||| |
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|
| T |
30303488 |
ataaatgtctgtaacgtgattgactaattataactgcatgcacaatttaaaaccatctagacatatatatccacattttcttttctgctttttattcgat |
30303587 |
T |
|
| Q |
377 |
ctcttaccatttatcattgttct---------tcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctctg |
458 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
30303588 |
ctcttaccatttatcattgttctgtctttgactcctttccaacagtctttctcattgtctggaagtcaaaaccaacagtccttcttctctg |
30303678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 30303258 - 30303377
Alignment:
| Q |
19 |
agcattgcttatttagctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30303258 |
agcattgcttatttggctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggc |
30303357 |
T |
|
| Q |
119 |
gttgttactttttctcatat |
138 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
30303358 |
gatgttactttttctcatat |
30303377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 30298074 - 30298333
Alignment:
| Q |
19 |
agcattgcttatttagctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatatggc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
30298074 |
agcattgcttatttggctaaccgagatgacaatgaggatcttagagtattagatcttgccatccccgttaacagacccggtaaatttcaggtaatatggc |
30298173 |
T |
|
| Q |
119 |
gttgttactttttctcatatcattctcagtcatgtatacataattacatatcatagttttaaactgtggtatgcaacggcgcctagaggtctctacagca |
218 |
Q |
| |
|
| |||||||||||||||||| || || ||||||| | ||||| | |||||||| || |||||||||| ||| ||||||| ||||||| || |
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|
| T |
30298174 |
actcttactttttctcatatcactcccaatcatgta--------ttcatattaaggttttaaattgcggtatgcaacagcgtctagaggcctctacaaca |
30298265 |
T |
|
| Q |
219 |
tatcacaatatagaaattgacaccgcattggtttcattttcgcacattttatcttaatataaatgttt |
286 |
Q |
| |
|
|||||||||||| |||| || | ||||||||| ||||||| |||||| | ||| |||||||||||| |
|
|
| T |
30298266 |
tatcacaatataaaaatcgataacgcattggtcacattttctcacattatttctatatataaatgttt |
30298333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 458
Target Start/End: Original strand, 30290930 - 30291024
Alignment:
| Q |
364 |
ctttttcctcgatctcttaccatttatcattgttcttcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctctg |
458 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30290930 |
ctttttcttcgatctcttaccatttatcattgttcttcctttccaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctctg |
30291024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 30285620 - 30285701
Alignment:
| Q |
34 |
gctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatat |
115 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
30285620 |
gctaaccgagatgacaacaaggatcttagagtcttagatcttgccatccccgttaacaggcccggtcaatttcaggtaatat |
30285701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 30298437 - 30298495
Alignment:
| Q |
400 |
tcctttcgaacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctctg |
458 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
30298437 |
tcctttccaacagtctttctcattgtctggaagtcaaaaccaacagtccttcttctctg |
30298495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 30285995 - 30286045
Alignment:
| Q |
408 |
aacagtctttctcattgtctggaaatcaaaaccaacaatccttcttctctg |
458 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||| |||||| |
|
|
| T |
30285995 |
aacagtctttctcattgtctgaaagtgaaaaccaacaatccttcctctctg |
30286045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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