View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_30 (Length: 459)
Name: NF11787_low_30
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 8883864 - 8884288
Alignment:
| Q |
18 |
aataacgataacgattaataagcnnnnnnnttggagattattaatttaagtcaaaa-ttaaggtcatcactttctcactgaccacataattcaacggctg |
116 |
Q |
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| T |
8883864 |
aataacgataacgattaataagcaaaaaa-ttggagattattaatttaagtcaaaaattaaggtcatcactgtcttactgaccacataattcaacggctg |
8883962 |
T |
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| Q |
117 |
ttttcaagcccttgttagcagcatggttcagctcttgttgattcctgatagaaccatttggaccccctgttcttgtttttgcatcgtatgtaccagcatc |
216 |
Q |
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| T |
8883963 |
ttttcaagcccttgttagcagcatggttcagctcttgttgattcctgatagaaccatttggaccccctgttcttgtttttgcgtcgtatgtaccagcatc |
8884062 |
T |
|
| Q |
217 |
atgccacctataaatcaatactatatgttatacaatttatgtatatg--ttatagtaaaaggtttgtaaagttgaaattaatgtaacaaacgtacgctaa |
314 |
Q |
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| T |
8884063 |
atgccacctataaatcaatattatatgttatacaatttatgtatatgttttatagtaaaaggtttgtaaagttgaaattattgtaacaaacgtacgctaa |
8884162 |
T |
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| Q |
315 |
tcgtagcatgagaggagcacattttttattagtgataaaagaacgaagatcgcgacaagcctcctcgatttctttaacatactctgcatcaactgcatat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8884163 |
tcgtagcatgagaggagcacattttttattagtgataaaagaacgaagatcgcgacgaacctcctcgatttctttaacatactctgcatcaactgcatat |
8884262 |
T |
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| Q |
415 |
ttagccatacttttcaaggctttggtt |
441 |
Q |
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| T |
8884263 |
ttagccatac-ttgcaaggctttggtt |
8884288 |
T |
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