View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_low_35 (Length: 436)

Name: NF11787_low_35
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_low_35
NF11787_low_35
[»] chr6 (28 HSPs)
chr6 (19-417)||(7993851-7994249)
chr6 (19-400)||(6594272-6594656)
chr6 (191-410)||(6589164-6589383)
chr6 (200-410)||(6416005-6416215)
chr6 (219-399)||(7119207-7119387)
chr6 (219-399)||(7131685-7131865)
chr6 (200-402)||(6432208-6432410)
chr6 (261-399)||(6402910-6403048)
chr6 (263-402)||(6410053-6410192)
chr6 (263-402)||(6394911-6395050)
chr6 (199-402)||(6426558-6426761)
chr6 (262-406)||(14820736-14820880)
chr6 (219-401)||(10579605-10579787)
chr6 (261-406)||(6585148-6585293)
chr6 (199-369)||(8913834-8914003)
chr6 (263-407)||(6423259-6423403)
chr6 (19-115)||(6602874-6602970)
chr6 (266-401)||(6596844-6596979)
chr6 (19-82)||(7131984-7132047)
chr6 (21-82)||(10579426-10579487)
chr6 (32-72)||(6423594-6423634)
chr6 (19-110)||(6410345-6410436)
chr6 (19-57)||(6432543-6432581)
chr6 (19-88)||(6426854-6426923)
chr6 (19-116)||(6596615-6596712)
chr6 (208-248)||(9411556-9411596)
chr6 (19-87)||(14821052-14821120)
chr6 (295-406)||(19632482-19632593)
[»] chr3 (3 HSPs)
chr3 (199-410)||(13470581-13470792)
chr3 (199-384)||(51764289-51764474)
chr3 (199-406)||(51113630-51113837)
[»] chr7 (5 HSPs)
chr7 (208-410)||(10614632-10614834)
chr7 (19-79)||(15091820-15091880)
chr7 (263-410)||(15092064-15092211)
chr7 (30-82)||(10169816-10169868)
chr7 (30-82)||(10177341-10177393)
[»] chr4 (12 HSPs)
chr4 (250-394)||(53761672-53761816)
chr4 (200-394)||(21834228-21834422)
chr4 (28-162)||(547203-547337)
chr4 (269-406)||(1600462-1600599)
chr4 (196-400)||(55908571-55908778)
chr4 (333-401)||(532237-532305)
chr4 (273-394)||(546968-547089)
chr4 (285-409)||(659749-659873)
chr4 (351-406)||(1519143-1519198)
chr4 (351-402)||(8184031-8184082)
chr4 (207-400)||(570400-570590)
chr4 (350-410)||(1537767-1537827)
[»] chr1 (13 HSPs)
chr1 (191-406)||(19468340-19468555)
chr1 (19-248)||(33160708-33160937)
chr1 (155-228)||(29658767-29658840)
chr1 (155-248)||(29691282-29691375)
chr1 (155-248)||(29718794-29718887)
chr1 (20-82)||(29658623-29658685)
chr1 (20-82)||(29691138-29691200)
chr1 (20-82)||(29718650-29718712)
chr1 (150-248)||(30827311-30827409)
chr1 (146-240)||(9586848-9586942)
chr1 (196-240)||(9581280-9581324)
chr1 (30-82)||(19468185-19468237)
chr1 (20-80)||(30827467-30827527)
[»] chr2 (1 HSPs)
chr2 (196-400)||(1037507-1037714)
[»] chr5 (3 HSPs)
chr5 (254-401)||(20477986-20478133)
chr5 (19-82)||(20477751-20477814)
chr5 (284-401)||(41889488-41889605)
[»] scaffold0807 (1 HSPs)
scaffold0807 (274-401)||(1388-1515)
[»] chr8 (3 HSPs)
chr8 (23-88)||(17627729-17627794)
chr8 (333-401)||(18315256-18315324)
chr8 (270-402)||(34936083-34936215)
[»] scaffold0295 (1 HSPs)
scaffold0295 (269-402)||(543-676)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 7993851 - 7994249
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993851 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 7993950  T
Q  119 aatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993951 aatttcttgacggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 7994050  T
Q  219 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaa 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7994051 ttttcccaaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaa 7994150  T
Q  319 catagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatggcgaaac 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7994151 catagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaac 7994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 6594272 - 6594656
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 118  Q
    |||||||||||| ||||||||||| |||||||  ||||| | |||| |||| ||||||||||| ||||||||| | ||||  | ||||| || || ||      
T  6594272 cacagaatcagctttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaatatcgggaaggagagtgcagtgagttct 6594371  T
Q  119 aatttcttgatggattt---tcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgcta 215  Q
    ||||  |||| ||||||   |  |  || |||||||||||||||||||||||| |||| |||| | || |||| ||||| |||||||||||||||||||     
T  6594372 aattctttgagggatttcgttgttgtaaaccctcaattgaagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgctt 6594471  T
Q  216 ccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcattt 315  Q
    | |||||||||| |||| || |||| |||||||  | || | ||   |||||||||||||||||| | |||||||||| ||||| |||||| |  |||||    
T  6594472 ctattttccccactttggagctgcttgatttgaggttttccgatcaaatatctgaaggtatttgtcaagttttaaggagatgttataagattacacattt 6594571  T
Q  316 gaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaataca 400  Q
    | || || |||  ||| |||||||||||||||  ||||| |||||| ||||||| || || ||||||||| || |||||||||||    
T  6594572 gtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaataca 6594656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 191 - 410
Target Start/End: Original strand, 6589164 - 6589383
Alignment:
Q  191 gatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaa 290  Q
    |||||||| |||||| |||||||| ||||||||||||||||  || |||| ||||| |||||||| |||   |||||| ||||||||||| | || || |    
T  6589164 gatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattga 6589263  T
Q  291 ggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacat 390  Q
    | | |||||||||||| |||||||||||| |||||   ||||  | |||||||||||| |||||||||||||||||||| | ||| |||||||||||| |    
T  6589264 gaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaactt 6589363  T
Q  391 gtcaaatacaagggttaatg 410  Q
    |||||||||||  |||||||    
T  6589364 gtcaaatacaaatgttaatg 6589383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 200 - 410
Target Start/End: Complemental strand, 6416215 - 6416005
Alignment:
Q  200 atcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 299  Q
    |||||| ||||| || |||  ||||||||||||||| |||| |||||||||  ||| |||    ||||||||||||||||| | ||||||| || |||||    
T  6416215 atcataatgttttcttccaacttccccaatttgcagctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgtt 6416116  T
Q  300 gtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatac 399  Q
    |||||||  ||||||||||| |||||  ||||| || |||||||||||  |||||| ||||||||||||| || || |||||||||||| ||||||||||    
T  6416115 gtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatac 6416016  T
Q  400 aagggttaatg 410  Q
    || ||||||||    
T  6416015 aaaggttaatg 6416005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 219 - 399
Target Start/End: Complemental strand, 7119387 - 7119207
Alignment:
Q  219 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaa 318  Q
    ||||||||||||| ||  | || ||||||||| ||||||||   |||||||||||||||||| | |||||||||| ||||| |||||| |  ||||||||    
T  7119387 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaa 7119288  T
Q  319 catagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatac 399  Q
    | ||||| | ||| |||||||||||||||| |||||||||||||| ||||   |||| |||||||||||| ||||| ||||    
T  7119287 cttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatac 7119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 219 - 399
Target Start/End: Complemental strand, 7131865 - 7131685
Alignment:
Q  219 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaa 318  Q
    ||||||||||||| ||  | || ||||||||| ||||||||   |||||||||||||||||| | |||||||||| ||||| |||||| |  ||||||||    
T  7131865 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaa 7131766  T
Q  319 catagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatac 399  Q
    | ||||| | ||| |||||||||||||||| |||||||||||||| ||||   |||| |||||||||||| ||||| ||||    
T  7131765 cttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatac 7131685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 200 - 402
Target Start/End: Complemental strand, 6432410 - 6432208
Alignment:
Q  200 atcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 299  Q
    |||||| |||||||| |||||||||||||||||||    || ||||||  ||  ||  || |||||  ||||||||||||| | |||||||||| |||||    
T  6432410 atcataatgtttgcttccattttccccaatttgcaacatcttgatttgcgttggtgtcatcgtataaatgaaggtatttgtcaagttttaaggagatgtt 6432311  T
Q  300 gtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatac 399  Q
    ||||  | |  ||||||||| ||||| |||||| || |||||||||||  ||||||||||||| |||||| |||||  ||||||||||| ||||||||||    
T  6432310 gtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatac 6432211  T
Q  400 aag 402  Q
    |||    
T  6432210 aag 6432208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 261 - 399
Target Start/End: Complemental strand, 6403048 - 6402910
Alignment:
Q  261 gtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactt 360  Q
    |||||||||||||||||||| | |||||||||| ||||||||| || |||||||||||| || | |  ||| |||||||||||||||| ||||| |||||    
T  6403048 gtatatctgaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactt 6402949  T
Q  361 tgtagttccgaagctagaggtgttgaacatgtcaaatac 399  Q
    || ||||||  | ||||| ||||||||| ||||| ||||    
T  6402948 tgcagttccccaactagaagtgttgaacttgtcagatac 6402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 6410192 - 6410053
Alignment:
Q  263 atatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttg 362  Q
    |||||||||||||||||| | ||||||  ||||||||||||| | | ||||||| || ||||| |||| | || |||||||||||  |||||||||||||    
T  6410192 atatctgaaggtatttgtcaagttttacagaaatgttgtaagcttaagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttg 6410093  T
Q  363 tagttccgaagctagaggtgttgaacatgtcaaatacaag 402  Q
     |||||| |||||  |||||||||||  ||||||||||||    
T  6410092 aagttcccaagctgaaggtgttgaactagtcaaatacaag 6410053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 6395050 - 6394911
Alignment:
Q  263 atatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttg 362  Q
    |||||||||||||||||| | ||||||| ||||||||||||| | |  ||||||||| ||||    ||| ||| |||||| ||||  |||||||||||||    
T  6395050 atatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttg 6394951  T
Q  363 tagttccgaagctagaggtgttgaacatgtcaaatacaag 402  Q
     ||||||  |||| |||||||||||| |||||||||||||    
T  6394950 cagttcccgagctggaggtgttgaacttgtcaaatacaag 6394911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 402
Target Start/End: Complemental strand, 6426761 - 6426558
Alignment:
Q  199 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 298  Q
    ||||||| ||| |||| |||||||||||||||| ||| | || ||||||||   ||||  ||  |||||||||||||||||| | |||||||||||||||    
T  6426761 catcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgt 6426662  T
Q  299 tgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaata 398  Q
    |||||| | |  ||||||||| ||||    ||| |||  ||||| ||||  ||||||||||||| ||||||  |||| |||||||||||  ||||||| |    
T  6426661 tgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcaaaca 6426562  T
Q  399 caag 402  Q
    ||||    
T  6426561 caag 6426558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 406
Target Start/End: Complemental strand, 14820880 - 14820736
Alignment:
Q  262 tatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaacttt 361  Q
    ||||||||||||||||||| | | ||||||||||||||||||| | |  ||||||||| |||    |||| || ||||||| ||||  ||||| ||||||    
T  14820880 tatatctgaaggtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgttcaggagtgaaactacatggaattaacttt 14820781  T
Q  362 gtagttccgaagctagaggtgttgaacatgtcaaatacaagggtt 406  Q
    | |||||| ||| |||||||||||||| | |||||||||| ||||    
T  14820780 gcagttcccaagttagaggtgttgaacttatcaaatacaaaggtt 14820736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 401
Target Start/End: Original strand, 10579605 - 10579787
Alignment:
Q  219 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaa 318  Q
    ||||||||||||||||| |||| ||||||||| ||||| |    |||||||||||||||| | | |||| | | | |||| ||||||| | |||||||||    
T  10579605 ttttccccaatttgcagctgcttgatttgaatacttgcgaatacatatctgaaggtatttttcaagtttcaggaagatgtggtaagattaagcatttgaa 10579704  T
Q  319 catagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaa 401  Q
    | ||||| | ||| |||||||||||| |||  |||| ||  ||||| ||||  |||| |||||||||||| ||||| ||||||    
T  10579705 cttagccaaatgtccaagagtgaagcgacttagaataaagattgtaattccccagctggaggtgttgaacttgtcatatacaa 10579787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 6585148 - 6585293
Alignment:
Q  261 gtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactt 360  Q
    |||||||||||||||||||| | |||||||||| ||||| ||| || |||||||||||| |  | |  ||| |||||||||||||||| ||||| |||||    
T  6585148 gtatatctgaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactt 6585247  T
Q  361 tgtagttccgaagctagaggtgttgaacatgtcaaatacaagggtt 406  Q
    | ||||| |  || | ||||| |||||| ||||| |||||| ||||    
T  6585248 tttagttacccagttggaggtattgaacttgtcagatacaaaggtt 6585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 369
Target Start/End: Original strand, 8913834 - 8914003
Alignment:
Q  199 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 298  Q
    ||||||| |||||||| |||||||  |||||||||| ||||| ||||| |||| |||  ||  ||||||| ||||||||||| | |||||||| | ||||    
T  8913834 catcataatgtttgcttccattttttccaatttgcatatgcttgattt-aattattgagattatatatctaaaggtatttgtcaagttttaagaagatgt 8913932  T
Q  299 tgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttcc 369  Q
    |||||||| |  ||||||||| | |  |  ||  |||||||||||||||| | ||| ||||||||||||||    
T  8913933 tgtaagattaaacatttgaacttcgttggatgatcaagagtgaagctacttgcaataaactttgtagttcc 8914003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 407
Target Start/End: Complemental strand, 6423403 - 6423259
Alignment:
Q  263 atatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttg 362  Q
    |||| ||| ||||||||| | |||||| |||||||| || || | |  ||||||||| ||||| |||||  |  |||||||||||  | ||||||||||     
T  6423403 atatttgatggtatttgtcatgttttacggaaatgtcgtgagcttaaacatttgaacttagcctattgtgaacaagtgaagctacgtgcaatgaactttt 6423304  T
Q  363 tagttccgaagctagaggtgttgaacatgtcaaatacaagggtta 407  Q
     |||||| ||||| |||||||||||| ||||||||||||| ||||    
T  6423303 aagttcccaagctggaggtgttgaacttgtcaaatacaagagtta 6423259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 6602874 - 6602970
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaat 115  Q
    |||||||| | ||||||||||||| |||| ||||||||| |||||| |||| ||||||||||||  |||| || |||||| || || ||||||||||    
T  6602874 cacagaattatccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaat 6602970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 6596844 - 6596979
Alignment:
Q  266 tctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtag 365  Q
    ||||||||||||||| | ||||| |||| ||||  |||||| | ||||||||||  |||||| ||| |||| ||||||| ||| | ||| ||||||| |     
T  6596844 tctgaaggtatttgtcaagttttcaggagatgtgataagattaagcatttgaactgagccgaatgttcaagtgtgaagcgacttgaaataaactttgaaa 6596943  T
Q  366 ttccgaagctagaggtgttgaacatgtcaaatacaa 401  Q
    ||||  |||| |||||||||||| |||||| |||||    
T  6596944 ttccccagctggaggtgttgaacttgtcaagtacaa 6596979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 7132047 - 7131984
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    |||||||| |||||||| |||||||||||||||||| || |||||| ||||  |||||||||||    
T  7132047 cacagaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 10579426 - 10579487
Alignment:
Q  21 cagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    ||||||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||    
T  10579426 cagaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 6423634 - 6423594
Alignment:
Q  32 ttgttttcactcgttagaaactgtccatcacttcgtgaaat 72  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  6423634 ttgttttcactcgttagaaactgtccttcacttagtgaaat 6423594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 6410436 - 6410345
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtag 110  Q
    |||||||| ||||  |||||||||||||||||| ||||| ||||||  ||| ||||||||| || | |||| | |||||| || ||||||||    
T  6410436 cacagaattagcccagttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtag 6410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 6432581 - 6432543
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtcc 57  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  6432581 cacagaatcagccctgttttcactcgttggaaactgtcc 6432543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 6426923 - 6426854
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 88  Q
    ||||||| || | ||||||||||| |||||||||||||| ||| || |||| || ||||||||| |||||    
T  6426923 cacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaaggcaca 6426854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 6596615 - 6596712
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatt 116  Q
    ||||||||||||| ||||||| ||||| ||||| ||||| || ||| |||| ||||||||| ||  ||||  | ||||||  | ||||||||||||||    
T  6596615 cacagaatcagccgtgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatgcaaaacacagctattgggacggagagtgtagagaatt 6596712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 9411596 - 9411556
Alignment:
Q  208 gtttgctaccattttccccaatttgcagatgctcgatttga 248  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 14821120 - 14821052
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcac 87  Q
    ||||||| || ||||||||||||||||||| ||||||   ||||||  |||| ||||||||||| ||||    
T  14821120 cacagaaacaaccttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcac 14821052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 19632593 - 19632482
Alignment:
Q  295 atgttgtaagatcaggcatttgaacatagc-cgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtc 393  Q
    |||||||||||| | |||||||||| || | |||| || ||| ||| || ||||| ||||| |||||| ||||||| ||||||||||||||| || ||||    
T  19632593 atgttgtaagataacgcatttgaacttaactcgat-gttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgtc 19632495  T
Q  394 aaatacaagggtt 406  Q
      |||||| ||||    
T  19632494 gtatacaaaggtt 19632482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 199 - 410
Target Start/End: Original strand, 13470581 - 13470792
Alignment:
Q  199 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 298  Q
    ||||||| |||||||| ||| |||||||||||||||| |||| |||||||||| |||||||    ||||  ||||||||||| | |||||||||| ||||    
T  13470581 catcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgt 13470680  T
Q  299 tgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaata 398  Q
    |||||||| |||||||||||| ||||| |||||| || |||||||||||| |||||||||||||| ||||| || || |||||||||||| |||||||||    
T  13470681 tgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaata 13470780  T
Q  399 caagggttaatg 410  Q
    ||| ||||||||    
T  13470781 caaaggttaatg 13470792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 199 - 384
Target Start/End: Original strand, 51764289 - 51764474
Alignment:
Q  199 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 298  Q
    ||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||||||| | |||||| ||||| | ||| | |||||||||| ||||    
T  51764289 catcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgt 51764388  T
Q  299 tgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgtt 384  Q
    | |||||| |||||||||||| || |||| ||| |||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  51764389 tctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgtt 51764474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 406
Target Start/End: Original strand, 51113630 - 51113837
Alignment:
Q  199 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 298  Q
    ||||||| || ||||| |||||||||||||| ||||| | || ||||| | |  |||| |||  ||||| |||||||||||| | ||||||| || ||||    
T  51113630 catcataatgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggtatttgtcaagttttaaagagatgt 51113729  T
Q  299 tgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaata 398  Q
    ||||| || |||||||||||  ||||  | ||| ||| | |||||||||| ||||||||||||| || ||| || || ||||||||  || |||||||||    
T  51113730 tgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaata 51113829  T
Q  399 caagggtt 406  Q
    ||| ||||    
T  51113830 caatggtt 51113837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 208 - 410
Target Start/End: Complemental strand, 10614834 - 10614632
Alignment:
Q  208 gtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatc 307  Q
    ||||||| ||| |||||||||||||||  |||| |||||||||  |||||||    ||| ||||||||||||| | |||||||||| ||||||||||||     
T  10614834 gtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaagatt 10614735  T
Q  308 aggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggtta 407  Q
    |||||||||||| ||||| |||||| || |||||||||||| ||||||||| |||| ||||| || || |||||||||||| |||||||||| | |||||    
T  10614734 aggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatacgaaggtta 10614635  T
Q  408 atg 410  Q
    |||    
T  10614634 atg 10614632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 15091820 - 15091880
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatg 79  Q
    ||||||| || ||||||||||||||| |||||||||||| || |||  |||||||||||||    
T  15091820 cacagaaacaaccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatg 15091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 15092064 - 15092211
Alignment:
Q  263 atatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttg 362  Q
    |||||| ||||||||| | | |||||||||||||||| |||| | |  ||||||||| || | |  |||  ||| ||||| ||||  |||||||||||||    
T  15092064 atatctcaaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttg 15092163  T
Q  363 tagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatg 410  Q
     ||||||  |||| |||||||||||  ||||| | |||| ||||||||    
T  15092164 cagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatg 15092211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 10169816 - 10169868
Alignment:
Q  30 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10169816 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 10177341 - 10177393
Alignment:
Q  30 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10177341 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 250 - 394
Target Start/End: Original strand, 53761672 - 53761816
Alignment:
Q  250 ttcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctacta 349  Q
    ||||||| || | |||||| ||||||||||| | |||||||||| ||||||||| || |||||||||||| ||||||| ||| |||||||||||||| |     
T  53761672 ttcttgcgatcgaatatctaaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaatt 53761771  T
Q  350 ggaatgaactttgtagttccgaagctagaggtgttgaacatgtca 394  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||    
T  53761772 ggaatgaactttgtagttcccaagctagaggcgttgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 394
Target Start/End: Original strand, 21834228 - 21834422
Alignment:
Q  200 atcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 299  Q
    |||||| |||||||| | |||||||||||||| ||| |||| ||||||| ||||| ||     ||||| |||||||||||  | ||||||||||||||||    
T  21834228 atcataatgtttgcttcaattttccccaatttacagctgcttgatttgacttcttccacacagatatcagaaggtatttgcgaagttttaaggaaatgtt 21834327  T
Q  300 gtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtca 394  Q
    ||||||| | |||||||||| || | | ||||   | |||||||||||   | || |||||||||||||| ||||| ||||||||| || |||||    
T  21834328 gtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttcccaagctggaggtgttggacttgtca 21834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 547337 - 547203
Alignment:
Q  28 agccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttg 127  Q
    |||||||||| |||||||||| || ||| | |||||| |||| ||||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  ||     
T  547337 agccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttc 547238  T
Q  128 atggattttcctccaagccctcaattgaagtctct 162  Q
    | |||||||  |  |||||||||||||||||||||    
T  547237 aaggattttgttgtaagccctcaattgaagtctct 547203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 406
Target Start/End: Complemental strand, 1600599 - 1600462
Alignment:
Q  269 gaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttc 368  Q
    |||||||||||| | |||||||||| || || ||| || || ||||||||| ||||| | ||| ||| | ||||||| | |||||||||||||| |||||    
T  1600599 gaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttc 1600500  T
Q  369 cgaagctagaggtgttgaacatgtcaaatacaagggtt 406  Q
      || || |||||||||||| ||||| |||||||||||    
T  1600499 ttaaactggaggtgttgaacttgtcatatacaagggtt 1600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 400
Target Start/End: Original strand, 55908571 - 55908778
Alignment:
Q  196 aaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatct---gaaggtatttgttacgttttaagg 292  Q
    ||||||||||||||||||| |||||||||||||||||||  | || |||||||  || ||| ||   ||||||   |||||||||||| | ||| |||||    
T  55908571 aaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaagg 55908670  T
Q  293 aaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgt 392  Q
    | |||||||||| | || ||||||||  ||||| | ||| |||||||||| |||||  |||| ||||||  ||||||  |  |||||||||| ||| |||    
T  55908671 agatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 55908770  T
Q  393 caaataca 400  Q
    || |||||    
T  55908771 cacataca 55908778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 401
Target Start/End: Complemental strand, 532305 - 532237
Alignment:
Q  333 caagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaa 401  Q
    |||||||||| ||||| ||||||||||||| ||| || |||||||||||||||||| ||||| ||||||    
T  532305 caagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaa 532237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 547089 - 546968
Alignment:
Q  273 gtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaa 372  Q
    |||||||| | |||||||||| |||||||||||| |||||||||||| || || |||||  |  |||||| ||| | ||||||||||||| |||||| ||    
T  547089 gtatttgtgatgttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaa 546990  T
Q  373 gctagaggtgttgaacatgtca 394  Q
      | |||||| ||||| |||||    
T  546989 attggaggtggtgaacttgtca 546968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 409
Target Start/End: Complemental strand, 659873 - 659749
Alignment:
Q  285 ttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgtt 384  Q
    ||||||||| ||||||||| || ||  |||| ||| |||||   ||| |||||| |||||||| || ||| || |||| |||||| || |||||||||||    
T  659873 ttttaaggagatgttgtaacattagatatttaaacttagcctgctgttcaagagggaagctacgagtaataaattttgaagttcccaaactagaggtgtt 659774  T
Q  385 gaacatgtcaaatacaagggttaat 409  Q
    |||| ||||| ||||||| ||||||    
T  659773 gaacttgtcacatacaagtgttaat 659749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 1519143 - 1519198
Alignment:
Q  351 gaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggtt 406  Q
    |||||||||||| |||||| || ||||||||||||||| ||||| |||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggtt 1519198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 8184031 - 8184082
Alignment:
Q  351 gaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaag 402  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||| |||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaag 8184082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 400
Target Start/End: Complemental strand, 570590 - 570400
Alignment:
Q  207 tgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagat 306  Q
    |||||||| | |||||||||||||||||||| || ||||| | || |||||||   ||||| ||  |||||||| | ||||||||   |||||||||  |    
T  570590 tgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgatagtatttgtcaagttttaag---atgttgtaaact 570494  T
Q  307 caggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaataca 400  Q
     |||||||||||| ||||  | ||  ||| |||||| || |  ||| ||||||||| |||||  || || |||||||||||| ||||| |||||    
T  570493 taggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 410
Target Start/End: Original strand, 1537767 - 1537827
Alignment:
Q  350 ggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatg 410  Q
    ||||||||||||| |||||| || ||||| ||||||||| ||||| ||||||  |||||||    
T  1537767 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatg 1537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 191 - 406
Target Start/End: Original strand, 19468340 - 19468555
Alignment:
Q  191 gatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaa 290  Q
    |||| |||||||||| |||||||| ||||||| |||||||||||| |||| |||||||| || |||||    ||||| ||||| |||||| | |||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaaggcatttgtcaagttttaa 19468439  T
Q  291 ggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacat 390  Q
    |||  |||| ||| || |||||||| ||| ||||| | ||| |||||||||| ||||| ||| |||||||||||||||| ||||| |||||||||||  |    
T  19468440 ggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagtt 19468539  T
Q  391 gtcaaatacaagggtt 406  Q
    |||| |||||| ||||    
T  19468540 gtcagatacaaaggtt 19468555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 33160937 - 33160708
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttc 118  Q
    |||||||||||| ||||||||||| |||| ||||||||| |||||| |||| |||||||||||| |||||| | |||||| || |||| ||||| ||       
T  33160937 cacagaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcacaactattgggaaagagagtatagagcatgat 33160838  T
Q  119 aatttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 218  Q
    ||||  |||| ||| |||     |||||||||||| |||||||||| ||| ||   |||||| || |||||||||| ||||||| |||||||| ||  ||    
T  33160837 aattctttgacggactttgaagtaagccctcaattaaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttca 33160738  T
Q  219 ttttccccaatttgcagatgctcgatttga 248  Q
    | |||||||||||| || |||| |||||||    
T  33160737 tgttccccaatttggaggtgcttgatttga 33160708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 29658767 - 29658840
Alignment:
Q  155 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaa 228  Q
    |||||||||||||| |||| ||||||| | |||||||||  ||||||||||||||||||| |||||||||||||    
T  29658767 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaa 29658840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 29691282 - 29691375
Alignment:
Q  155 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 248  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| ||||||||||||| ||| || |||| |||||||    
T  29691282 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 29691375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 29718794 - 29718887
Alignment:
Q  155 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 248  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| ||||||||||||| ||| || |||| |||||||    
T  29718794 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 29718887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29658623 - 29658685
Alignment:
Q  20 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29658623 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29691138 - 29691200
Alignment:
Q  20 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29691138 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 29718650 - 29718712
Alignment:
Q  20 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    ||||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29718650 acagaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 30827409 - 30827311
Alignment:
Q  150 aattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 248  Q
    |||| |||||||||| ||| |||  |||| || | |||||||||| ||||||| |||||||| || | ||||||||||||||| || |||| |||||||    
T  30827409 aattaaagtctctttctttggctggctgttaatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 30827311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 9586942 - 9586848
Alignment:
Q  146 cctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgct 240  Q
    ||||||||||||||||||  ||| | || |  ||||  ||| ||||||  |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9586942 cctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgct 9586848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 9581324 - 9581280
Alignment:
Q  196 aaacatcatattgtttgctaccattttccccaatttgcagatgct 240  Q
    |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9581324 aaacatcataatgtttgcttcaattttccccaatttgcagctgct 9581280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 19468185 - 19468237
Alignment:
Q  30 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  19468185 ccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 30827527 - 30827467
Alignment:
Q  20 acagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatgg 80  Q
    ||||||||||| |||||||| ||||||| ||| ||||| ||||||  ||| ||||||||||    
T  30827527 acagaatcagctttgttttcgctcgttacaaattgtccttcacttactgacatcaaaatgg 30827467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 400
Target Start/End: Original strand, 1037507 - 1037714
Alignment:
Q  196 aaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatct---gaaggtatttgttacgttttaagg 292  Q
    ||||||||||||||||||| |||||||||||||||||||  | || |||||||  || ||| ||   ||||||   |||||||||||| | |||||||||    
T  1037507 aaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaagg 1037606  T
Q  293 aaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgt 392  Q
    | |||||||||| | || ||||||||  ||||| | | | |||||||||| |||||  |||| ||||||  ||||||  |  |||||||||| ||| |||    
T  1037607 agatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 1037706  T
Q  393 caaataca 400  Q
    || |||||    
T  1037707 cacataca 1037714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 401
Target Start/End: Original strand, 20477986 - 20478133
Alignment:
Q  254 tgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaa 353  Q
    |||||| |||||||||||| ||||||| |  | |||| || |||||||||| | |||||||||||| |||| |  |||  ||||| ||||||||| ||||    
T  20477986 tgcaatcgtatatctgaagatatttgtcaattcttaacgagatgttgtaagttaaggcatttgaacttagctggatgtcgaagagcgaagctacttggaa 20478085  T
Q  354 tgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaa 401  Q
    | ||| ||||| ||||  |||| |||||||||||| ||||| ||||||    
T  20478086 taaacgttgtaattccccagctggaggtgttgaacttgtcatatacaa 20478133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 20477751 - 20477814
Alignment:
Q  19 cacagaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 82  Q
    |||||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  20477751 cacagaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 41889488 - 41889605
Alignment:
Q  284 gttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgt 383  Q
    |||||||||| ||||||||| || ||  |||||||| || |||  ||| ||| |||||||||||| | ||||||||||  |||||| ||  | |||||||    
T  41889488 gttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgt 41889587  T
Q  384 tgaacatgtcaaatacaa 401  Q
    ||||| | ||| ||||||    
T  41889588 tgaacttatcatatacaa 41889605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 401
Target Start/End: Original strand, 1388 - 1515
Alignment:
Q  274 tatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaag 373  Q
    ||||||| | |||||||||| ||||| |||||| || ||||||||| |||||   ||| ||   ||| | ||| | | |||||||||||||||||| |||    
T  1388 tatttgtcaagttttaaggagatgttataagattagacatttgaacttagcctggtgttcatctgtggacctatttgaaatgaactttgtagttcctaag 1487  T
Q  374 ctagaggtgttgaacatgtcaaatacaa 401  Q
    |||||||||||| || ||||||||||||    
T  1488 ctagaggtgttggacttgtcaaatacaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 17627729 - 17627794
Alignment:
Q  23 gaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 88  Q
    |||||||||||||||||||||||||| || ||||| ||||||  ||| || ||||||||| |||||    
T  17627729 gaatcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcaca 17627794  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 401
Target Start/End: Original strand, 18315256 - 18315324
Alignment:
Q  333 caagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaa 401  Q
    ||||| |||||||||  ||||||||||||  |||||| || || |||||||||||| ||||| ||||||    
T  18315256 caagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaa 18315324  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 402
Target Start/End: Original strand, 34936083 - 34936215
Alignment:
Q  270 aaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttcc 369  Q
    ||||||||| | | |||||||||| ||||||| | || || |||||| || | ||||||||| ||| |||||| || |   |||||| |||||  |||||    
T  34936083 aaggtatttatcatgttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttcc 34936182  T
Q  370 gaagctagaggtgttgaacatgtcaaatacaag 402  Q
     || |||||||||||| || ||||| |||||||    
T  34936183 aaaactagaggtgttggacttgtcatatacaag 34936215  T

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Target: scaffold0295 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 402
Target Start/End: Original strand, 543 - 676
Alignment:
Q  269 gaaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttc 368  Q
    |||||||||||| | ||| |||||| ||||||||||   || ||||||||  ||||| | ||| |||||||||| |||||  |||| ||||||  |||||    
T  543 gaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttc 642  T
Q  369 cgaagctagaggtgttgaacatgtcaaatacaag 402  Q
    |  |  |||||||||| ||| ||||| |||||||    
T  643 ctgaattagaggtgtttaacttgtcacatacaag 676  T

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