View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_37 (Length: 434)
Name: NF11787_low_37
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_37 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 38605331 - 38605778
Alignment:
| Q |
1 |
tcaatttatttttagggtcaaattattctcaaatcttgaaaaaacaatcggaatgannnnnnnnnnnnnnnnnnnacttcattttgcggctgaaaatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
38605331 |
tcaatttatttttagggtcaaattattctcaaatcttgaaaaaacaatcggaatgatttttttatatatttttttaattcattttgcggctgaaaatgaa |
38605430 |
T |
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| Q |
101 |
atcattcagttctccatgttattgtcaattattaatagtaaaatgaccgtttatactactat------------gcagttctgttgtgttcagttcttat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38605431 |
atcattcagttctccatgttattgtcaattattaatagtaaaatgaccgtttatactactatttttcaaatcatgcagttctgttgtgttcagttcttat |
38605530 |
T |
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| Q |
189 |
tgtacgatgacgaaaggaagtggcaaagttgtgtacaacaaacaaagaacagatatttttactcacacaacacaacagagaaagcacgtgggtgaattcg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38605531 |
tgtacgatgacgaaaggaagtggcaaagttgtgtacaacaaacaaagaacagatattc--actcacacaacacaacagagaaagcacgtgggtgaattcg |
38605628 |
T |
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| Q |
289 |
aatttttcatctaacgtatatat----gcaaaataggtgttgtcaaaaaggtgacatgttcatgttgaccttccttaaaataatatattcatgttaacct |
384 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38605629 |
aatttttcatctaacgtatatattcaagcaaaataggtgttgtcaaaaaggtgacatgttcatgttgaccttccttaaaataatatattcatgttgacct |
38605728 |
T |
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| Q |
385 |
tactcccaaacttttcctttataagggctatacgtatcacacacacctca |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605729 |
tactcccaaacttttcctttataagggctatacgtatcacacacacctca |
38605778 |
T |
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