View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_low_38 (Length: 433)

Name: NF11787_low_38
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_low_38
NF11787_low_38
[»] chr5 (3 HSPs)
chr5 (11-401)||(42555759-42556149)
chr5 (298-416)||(28220180-28220295)
chr5 (206-281)||(28219984-28220059)
[»] chr8 (2 HSPs)
chr8 (330-416)||(43745107-43745191)
chr8 (206-279)||(43744882-43744955)
[»] chr7 (20 HSPs)
chr7 (330-416)||(8585530-8585616)
chr7 (298-416)||(3147501-3147616)
chr7 (330-416)||(8628790-8628876)
chr7 (326-415)||(8602228-8602317)
chr7 (327-416)||(29577493-29577582)
chr7 (202-281)||(3147326-3147405)
chr7 (333-416)||(8667680-8667763)
chr7 (326-416)||(6789766-6789856)
chr7 (326-416)||(8382700-8382790)
chr7 (333-398)||(8576587-8576652)
chr7 (214-267)||(8646951-8647004)
chr7 (212-281)||(27830902-27830971)
chr7 (327-416)||(29581665-29581754)
chr7 (225-281)||(6789597-6789653)
chr7 (326-398)||(8559587-8559659)
chr7 (204-267)||(8659427-8659490)
chr7 (326-416)||(8647131-8647221)
chr7 (330-416)||(8671454-8671540)
chr7 (330-412)||(17268197-17268279)
chr7 (327-416)||(7877557-7877646)
[»] chr4 (4 HSPs)
chr4 (330-416)||(9335715-9335801)
chr4 (333-406)||(30775513-30775586)
chr4 (204-281)||(35132512-35132589)
chr4 (333-413)||(35132709-35132789)
[»] chr6 (1 HSPs)
chr6 (212-281)||(28910654-28910723)
[»] chr1 (3 HSPs)
chr1 (330-415)||(34466618-34466703)
chr1 (339-416)||(15595308-15595385)
chr1 (199-275)||(34466826-34466902)
[»] chr2 (8 HSPs)
chr2 (325-413)||(12245233-12245321)
chr2 (330-402)||(12258419-12258491)
chr2 (204-281)||(14703472-14703549)
chr2 (202-281)||(12245433-12245512)
chr2 (333-412)||(16661820-16661899)
chr2 (204-267)||(16662033-16662096)
chr2 (204-280)||(7542290-7542366)
chr2 (225-281)||(12234774-12234830)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 42556149 - 42555759
Alignment:
Q  11 caaagtcatatccactttcaaatttgaagacacatctctactcattcacttgtaaggtgatacaaactaacacatcttcactcattcaagtaatgccttg 110  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  42556149 caaagtcatatccactttcaaatttgaagacacatcttcactcatttacttataaggtgatacaaactgacacatcttcactcattcaagtaatgccttg 42556050  T
Q  111 caggcaaacttggttagattcattaactaattaagagaacttatgagctaaaacatacagataatgtaaacatcctactatcaaagtactttgcaaagta 210  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42556049 caggcaaacttggttagattcattaaccaattaagagaacttatgagctaaaacatacagataatgtaaacatcctactatcaaagtactctgcaaagta 42555950  T
Q  211 tttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaagaggttgcaatgctttatttcttttgtccaa 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555949 tttcaccatcctactatccaagtcgtctccctcgaggtgagtgttaccagaggtggccttcacttggaagaggttgcaatgctttatttcttttgtccaa 42555850  T
Q  311 tccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttc 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42555849 tccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttc 42555759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 28220180 - 28220295
Alignment:
Q  298 ttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggc 397  Q
    ||||||||||||||||||| |||||||||   ||||||||||||||||||| |||| | | |||||| ||||||||||| |||||||||||||| |||||    
T  28220180 ttcttttgtccaatccatatgcaatagca---gcagcagtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggc 28220276  T
Q  398 tttccgctgataatcattg 416  Q
    |||||||||||||||||||    
T  28220277 tttccgctgataatcattg 28220295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 28219984 - 28220059
Alignment:
Q  206 aagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28219984 aagtagttcaccatcctactatcaaagtcctctcccccgaggtgagtgtttccagcggtggccttcacttggaaga 28220059  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 416
Target Start/End: Original strand, 43745107 - 43745191
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||||||||||||||||||||||||||||  || |||||||| | ||| |||||||  ||||||||||||||||||||||||    
T  43745107 gcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatcta--gtggctttccgctgataatcattg 43745191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 43744882 - 43744955
Alignment:
Q  206 aagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaa 279  Q
    ||||| |||||||||||| |||| || || ||||| ||||||||||||||||||||||||||||||||||||||    
T  43744882 aagtagttcaccatcctattatcaaaatcctctcctccgaggtgagtgtttccagaggtggccttcacttggaa 43744955  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 416
Target Start/End: Complemental strand, 8585616 - 8585530
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    |||||||||||||||||||||||| |||||||||| || |||||||| | ||| ||||| || |||||||| |||||| ||||||||    
T  8585616 gcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattg 8585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 416
Target Start/End: Original strand, 3147501 - 3147616
Alignment:
Q  298 ttcttttgtccaatccataagcaatagcagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggc 397  Q
    |||| ||||||| |||||| |||||||| ||||||| ||   ||||||||||||||  ||||| ||| || |||||||||  ||| ||||||||||| ||    
T  3147501 ttctcttgtccagtccatacgcaatagctgcagcagtag---gttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgc 3147597  T
Q  398 tttccgctgataatcattg 416  Q
    ||||||||||  |||||||    
T  3147598 tttccgctgagcatcattg 3147616  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 416
Target Start/End: Original strand, 8628790 - 8628876
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||||| |||||||||||| |||||||||| || |||||||| | ||| ||||  || |||||||| |||||| ||||||||    
T  8628790 gcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattg 8628876  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 8602228 - 8602317
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcatt 415  Q
    |||||| ||||| || ||||||||||||  ||| ||||| ||||||||||| | ||| |||||| |||||||||| |||||| |||||||    
T  8602228 agcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcatt 8602317  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 29577582 - 29577493
Alignment:
Q  327 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||||| |||||||||||||||  ||| ||||| || ||||||||| | || |||||| | |||||||| |||||| ||||||||    
T  29577582 gcagcagcagttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggcttttcgctgagaatcattg 29577493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 3147326 - 3147405
Alignment:
Q  202 tgcaaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||||| |||||||||||| |||| ||||| |||||||| ||||| |||||||| | | ||||||| ||||| ||||    
T  3147326 tgcaaagtagttcaccatcctattatcaaagtcctctcccccaaggtgggtgtttcctgcgatggccttaacttgaaaga 3147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 416
Target Start/End: Original strand, 8667680 - 8667763
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||| |||||||||||||||   || ||||| || |||||||||||||| |||||||| ||||| || |||||| ||||||||    
T  8667680 gcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctttcgctgagaatcattg 8667763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 6789766 - 6789856
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||| || ||||||||||||||    |||||||| ||||||||||| | ||| |||||||  ||||||||||| ||| ||||||||    
T  6789766 agcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattg 6789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 416
Target Start/End: Complemental strand, 8382790 - 8382700
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    |||||| ||||| || ||||||||||||  ||| ||||| || |||||||| | ||| |||||| ||||||||||||| ||| ||||||||    
T  8382790 agcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattg 8382700  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 8576587 - 8576652
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggct 398  Q
    ||||| |||||||||||||||| ||| ||||| ||||||||||| | |||||||||| | ||||||    
T  8576587 gcagtcggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggct 8576652  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 8646951 - 8647004
Alignment:
Q  214 caccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggc 267  Q
    |||||| |||||||| ||||| ||||| ||||||||||||||||||| ||||||    
T  8646951 caccattctactatcaaagtcctctcctccgaggtgagtgtttccagcggtggc 8647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 27830971 - 27830902
Alignment:
Q  212 ttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||||||||||| |||| ||||| ||||| || ||||||||||||||||  || ||||| ||||||||||    
T  27830971 ttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttccagcagttgccttaacttggaaga 27830902  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 29581754 - 29581665
Alignment:
Q  327 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||||| ||||| ||||||||| |||| ||||| || ||||| ||| | || |||||| | |||||||| |||||| ||||||||    
T  29581754 gcagcagcagttggttcgttgattatcctcattacattgaggccagctataatgccagcatctttggtggcttttcgctgagaatcattg 29581665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 6789597 - 6789653
Alignment:
Q  225 tatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||| ||||| ||||| ||||||||||||||||||  ||||||||| ||||||||||    
T  6789597 tatcaaagtcctctcctccgaggtgagtgtttccaccggtggccttaacttggaaga 6789653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 8559587 - 8559659
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggct 398  Q
    |||||| ||||| |||||||||||||||| ||| ||||| |||||||||||   |||||||||| | ||||||    
T  8559587 agcagctgcagttggttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggct 8559659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 8659427 - 8659490
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggc 267  Q
    ||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| |||||    
T  8659427 caaagtagttcaccattctgctatcaaagtcctctcctccaaggtgagtgtttccagaagtggc 8659490  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 8647131 - 8647221
Alignment:
Q  326 agcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||| || |||||||||||||||   || | ||| || |||||||| |  || |||||||| |||||||| |||||||||||||||    
T  8647131 agcagcagctgttggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtggcttttcgctgataatcattg 8647221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 416
Target Start/End: Complemental strand, 8671540 - 8671454
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||||||| ||||| || |||||  | |||||| ||||||||    
T  8671540 gcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatcaatggtggccgttcgctgagaatcattg 8671454  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 412
Target Start/End: Original strand, 17268197 - 17268279
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatc 412  Q
    |||||||| ||||||||||||| |||||  ||||| || ||||||||   ||| |||||||| |||||||| |||||| ||||    
T  17268197 gcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaatc 17268279  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 416
Target Start/End: Complemental strand, 7877646 - 7877557
Alignment:
Q  327 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||||| |||||||| ||||||  ||||||||| || || ||||  | ||| |||||| |||||||||| || ||| ||||||||    
T  7877646 gcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattg 7877557  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 416
Target Start/End: Complemental strand, 9335801 - 9335715
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    |||||||| |||||||||||||||   || ||||| || |||||||||||||| |||||||| ||||| || |||||| ||||||||    
T  9335801 gcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattg 9335715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 30775513 - 30775586
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctg 406  Q
    |||||||| ||||| |||||  |||||||||| ||||||||||| | ||| ||||| || |||||||| |||||    
T  30775513 gcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggcttttcgctg 30775586  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 35132512 - 35132589
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||| |||||||| ||  |||| ||||| ||||| ||||| ||||||||||| |  |||||||| ||||||||||    
T  35132512 caaagtagttcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagtggccttaacttggaaga 35132589  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 35132709 - 35132789
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatca 413  Q
    ||||| |||||||| ||||   ||||||||||  |||||||||||| ||| |||||||| |||||||| || ||| |||||    
T  35132709 gcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttgagaatca 35132789  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 28910654 - 28910723
Alignment:
Q  212 ttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||||||||||| |||| | ||| ||  ||||||||||||||||||||| ||||||||| ||||||||||    
T  28910654 ttcaccatcctattatcaatgtcctcgaccccgaggtgagtgtttccagcggtggccttaacttggaaga 28910723  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 415
Target Start/End: Complemental strand, 34466703 - 34466618
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcatt 415  Q
    ||||||||||||||||||||||| | || |||||| || |||||||||||||| ||||| |  || ||||| |||||| |||||||    
T  34466703 gcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagcttttcgctgagaatcatt 34466618  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 15595308 - 15595385
Alignment:
Q  339 ggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatcattg 416  Q
    ||||||||||||| |   |||||||| || |||||||| | |||||||||||| |||||||| || ||| ||||||||    
T  15595308 ggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattg 15595385  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 34466902 - 34466826
Alignment:
Q  199 ctttgcaaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcactt 275  Q
    |||||||||||  ||| |||| ||| |||| ||||| ||||  |||||||||||||| ||||| |||||||| ||||    
T  34466902 ctttgcaaagtggttcgccattctattatcaaagtcctctcgtccgaggtgagtgttaccagaagtggccttaactt 34466826  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 12245321 - 12245233
Alignment:
Q  325 cagcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatca 413  Q
    |||| ||||||||||||||||| |||| | |||||||||| ||||||||||| |  || |||||||| || ||||| |||||| |||||    
T  12245321 cagctgcagcagtgggttcattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgcttttcgctgagaatca 12245233  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 12258491 - 12258419
Alignment:
Q  330 gcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttcc 402  Q
    |||||||| |||||||| | |||||||||||||||||| ||| ||||| ||||  ||||||| ||||||||||    
T  12258491 gcagcagtaggttcatttaatatcttcataacattcaggccaacaatattacccacatctatagtggctttcc 12258419  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 14703472 - 14703549
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||| |||||||| ||  |||| ||||| |||||||||||||||||||||||||  || ||||| | ||||||||    
T  14703472 caaagtagttcaccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagccttaatttggaaga 14703549  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 12245512 - 12245433
Alignment:
Q  202 tgcaaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    ||||||||| || ||||| ||| |||| || || ||||| || ||||||||||||||||  |||||||| ||||||||||    
T  12245512 tgcaaagtagtttaccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagtggccttaacttggaaga 12245433  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 16661899 - 16661820
Alignment:
Q  333 gcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggctttccgctgataatc 412  Q
    ||||||||||||||||||||| ||| ||| || || |||||||| | ||| ||||| || |||||||| |||||| ||||    
T  16661899 gcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatc 16661820  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 16662096 - 16662033
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggc 267  Q
    ||||||| |||| ||| ||  |||| ||||| |||||||||||||||||||||||||| |||||    
T  16662096 caaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagtgtttccagaagtggc 16662033  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 7542290 - 7542366
Alignment:
Q  204 caaagtatttcaccatcctactatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaag 280  Q
    ||||||| ||| |||| ||| |||| ||||| ||||| || ||||||||||| ||||  |||||||| |||||||||    
T  7542290 caaagtagttcgccattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggccttaacttggaag 7542366  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 12234774 - 12234830
Alignment:
Q  225 tatccaagtcgtctcccccgaggtgagtgtttccagaggtggccttcacttggaaga 281  Q
    |||| ||||| ||||||||||||||||||||||| |  ||||| || ||||||||||    
T  12234774 tatcaaagtcctctcccccgaggtgagtgtttccggctgtggctttaacttggaaga 12234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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