View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_41 (Length: 420)
Name: NF11787_low_41
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_41 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 49 - 420
Target Start/End: Original strand, 8518621 - 8518992
Alignment:
| Q |
49 |
tgctaaccttgtcatgcagggtgaagtaattatttgagatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgacaagaa |
148 |
Q |
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| T |
8518621 |
tgctaaccttgtcatgcagggtgaagtaattatttgacatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgccaaata |
8518720 |
T |
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| Q |
149 |
gcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaacc |
248 |
Q |
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| T |
8518721 |
gcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacaacatgttcaatactactacttctaacc |
8518820 |
T |
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| Q |
249 |
aaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttcaa |
348 |
Q |
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| T |
8518821 |
aaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaaggtccatttgcaatttcaa |
8518920 |
T |
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| Q |
349 |
ccttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgt |
420 |
Q |
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| T |
8518921 |
ccttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgt |
8518992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 45 - 420
Target Start/End: Original strand, 8526711 - 8527083
Alignment:
| Q |
45 |
tatttgctaaccttgtcatgcagggtgaagtaattatttgagatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgaca |
144 |
Q |
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| T |
8526711 |
tatttgcttactttgtcatgctgagtgaagtaattatttgagatagtgacaagagttgaggcatgggtaacatcagtaagtccatcagtacatcttgcca |
8526810 |
T |
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| Q |
145 |
agaagcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttct |
244 |
Q |
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| T |
8526811 |
agtagcaatgatcaatccaaatattagaagaagcaaaaacacttataccatcaccatcagaaccttgtcgataaccaacatgttcaatactactcct--- |
8526907 |
T |
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| Q |
245 |
aaccaaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatt |
344 |
Q |
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| T |
8526908 |
aaccataccaggattacttggtttacaatcatgaatactaataccatgcacaatcacatgactaacaccctgtattgtaatacatggtccatttccaatt |
8527007 |
T |
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| Q |
345 |
tcaaccttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgt |
420 |
Q |
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| T |
8527008 |
tcaactttagcacctctaccatcaattgttttgtaactattcacaataagttcatttttcaatttaattaccatgt |
8527083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 57 - 387
Target Start/End: Original strand, 55373607 - 55373934
Alignment:
| Q |
57 |
ttgtcatgcagggtgaagtaattatttgagatagtgacattagttgagttgtgaataacatcaataagtccatcagtacatcttgacaagaagcaatgat |
156 |
Q |
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| T |
55373607 |
ttgtcatgctgggtgaagtaattgttagaaatggtaatagcagttgaggcatgaataatatcaattagtccatcagttgaacgagccaaaaagcaatgat |
55373706 |
T |
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| Q |
157 |
caatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaaccaaaccagg |
256 |
Q |
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| T |
55373707 |
caatccaaatatttgaggaagcaaatatactaatagcatcgccatcggcacctcgacgacggccgacatgatcaggagtact---tctaacaagtccagc |
55373803 |
T |
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| Q |
257 |
attacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaa |
356 |
Q |
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| T |
55373804 |
tttacttggtttacaatcatgaatgctaattccatgtataataacatgactaacaccttgtattgtaatacaaggtccatttccaatctcaactttaact |
55373903 |
T |
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| Q |
357 |
cctctaccatcaattgtcttgtaactattca |
387 |
Q |
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| T |
55373904 |
cctctaccatcaatagtcttgtaactattca |
55373934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 7593607 - 7593679
Alignment:
| Q |
307 |
taacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaacctctaccatcaattgtcttgta |
379 |
Q |
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| T |
7593607 |
taacataatgtattgtaatacatccaccatttgcaatgtgaacactagcacctcttccatcaattgtcttgta |
7593679 |
T |
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