View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_42 (Length: 410)
Name: NF11787_low_42
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_42 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 37332231 - 37332625
Alignment:
| Q |
7 |
gtaactagtaagtgagtgagtgaattttatttatattatagtatatggtttgtattggaagaccctaggaagtgttcatttatggttgtggtggtgacag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37332231 |
gtaactagtaagtgagtgagtgaattttatttatattatagtatatggtttgtattggaagaccctaggaagtgttcatttatggttgtggtggtgacag |
37332330 |
T |
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| Q |
107 |
ataagtacaatttctctaatacgtggcagcaacttaaagtgcctgtctgcccgataaggacnnnnnnnnactctcgatttgcttgcacaaataagacatt |
206 |
Q |
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| T |
37332331 |
ataagtacaatttctctaatacgtggcagcaacttaaagtgcctgtctgccagataaggacttttttttactctcgatttgcttgcacaaataagacatt |
37332430 |
T |
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| Q |
207 |
caccttccagttccaccacccttccttactagttactgtacaacatagtttagagaaaaggggtgtgtgtgagcaaaattttgacatagataatatgtca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37332431 |
caccttccagttccaccacccttccttactagttactgtacaacatagtttagagaaaaggggtgtgtgtgagcaaaattttgacatagataatatgtca |
37332530 |
T |
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| Q |
307 |
ctaacatgtatatagaaatcaatagaagtgcaaaatttgaaacatatgtgatgaaccttgacaggaaatatggaattctatctttttgtcctatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37332531 |
ctaacatgtatatagaaatcaatagaagtgcaaaatttgaaatatatgtgatgaaccttgacaggaaatatggaattctatctttttgtcttatg |
37332625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 53406 - 53354
Alignment:
| Q |
287 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaa |
339 |
Q |
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| T |
53406 |
ttgacatagataatttgtcactcaagtgtatatagaaatcaatagaagtgcaa |
53354 |
T |
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Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 145228 - 145280
Alignment:
| Q |
287 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaa |
339 |
Q |
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| T |
145228 |
ttgacatagataatttgtcactcaagtgtatatagaaatcaatagaagtgcaa |
145280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 40648694 - 40648746
Alignment:
| Q |
287 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtgcaa |
339 |
Q |
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| T |
40648694 |
ttgacatagataatgtgtcactcaagtgtatatagaaatcaatagaagtgcaa |
40648746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 25060895 - 25060846
Alignment:
| Q |
287 |
ttgacatagataatatgtcactaacatgtatatagaaatcaatagaagtg |
336 |
Q |
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|||||||| ||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
25060895 |
ttgacatatataatgtgtcactcaaatgtatatagaaatcaatagaagtg |
25060846 |
T |
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