View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_43 (Length: 406)
Name: NF11787_low_43
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 22463875 - 22463765
Alignment:
| Q |
2 |
gacagtactttccggacttgatcgaacagttttccagtgattagacttagctgaaatcggaggtttctcattgtcatcgttaaaacgtgaactgcaacgg |
101 |
Q |
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| T |
22463875 |
gacagtaccttctggacttgatcgaacagttttccagtgactagacttagctgaaatctgaggtttctcattgtcatcgttaaaacgtgaactgcaacgg |
22463776 |
T |
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| Q |
102 |
tgctttctttt |
112 |
Q |
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||||||||||| |
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| T |
22463775 |
tgctttctttt |
22463765 |
T |
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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 26840504 - 26840410
Alignment:
| Q |
295 |
ttgaaatgaatgtccactcttttactctaaagattgtgcaactgtaatgtgaattttatgtttccaattagccttatctttagaaccatttttct |
389 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
26840504 |
ttgaaatgaatgtccactcttttacactaaagattgtgcaactgtaatgtgaattttatgcttccaattagccttatctttcgaaccatttttct |
26840410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 33926752 - 33926580
Alignment:
| Q |
2 |
gacagtactttccggacttgatcgaacagttttccagtgattagacttagctgaaatcggaggtttctcattgtcatcgttaaaacgtgaactgcaacgg |
101 |
Q |
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|||||||| ||| |||||||||| ||| ||||||| |||| ||||| ||||||||||||||||||||||||| |||||||| ||| | |||||||||||| |
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| T |
33926752 |
gacagtaccttctggacttgatctaacggttttccggtgactagacctagctgaaatcggaggtttctcattctcatcgtt-aaatgcgaactgcaacgg |
33926654 |
T |
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| Q |
102 |
tgctttcttttgcaaactggaaacttgaacagagtcctcaactccgttaaccgccgtattcactggagtaatct |
175 |
Q |
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| T |
33926653 |
tactttcttctgcaaattggaaacatgaacggagtcctcaactccaacaaccgttgttttcaccggagtaatct |
33926580 |
T |
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