View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_45 (Length: 402)
Name: NF11787_low_45
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 32 - 385
Target Start/End: Original strand, 42556139 - 42556492
Alignment:
| Q |
32 |
atatgactttgtttaagagggggtgatgtaatataaggcaatgaaagatgttgtcttctattttttagtgaagtatttatcactggggatttttatcgtg |
131 |
Q |
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| T |
42556139 |
atatgactttgtttaagagggggtgatgtaatataaggcaatgaaagatgttgtcttctattttttagtgaagtatttatcactggggatttttatcgtg |
42556238 |
T |
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| Q |
132 |
ttgtccaaccaattaagaaactaaactttctatttttcatcaaaggatcttatttctactgataaaaaggtttgttagcaaaataggtttgagagatttg |
231 |
Q |
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| T |
42556239 |
ttgtccaaccaattaagaaactaaactttctatttttcatcaaaggatcttatttctacgtataaaaaggtttgttagcaaaataggtttgagagatttg |
42556338 |
T |
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| Q |
232 |
atttcaatataactttgacagaaaatgttaggtgcagagttggaaaatttgcccaacaaaagcaggattccagcataacaaaatatatgacatttatctt |
331 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42556339 |
atttgaatataacttggacagaaaatgttaggtgcagagttggaaaatttgcccaacaaaagcaggattccagcataacaaaatatatgacatttatctt |
42556438 |
T |
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| Q |
332 |
ttccactaaacaggatttatattacattcagctcttatgtgcttcatagatgtc |
385 |
Q |
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| T |
42556439 |
ttccactaaacaggatttatattacattcaactcttatgtgcttcatagatgtc |
42556492 |
T |
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