View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_low_48 (Length: 390)

Name: NF11787_low_48
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_low_48
NF11787_low_48
[»] chr2 (23 HSPs)
chr2 (1-176)||(28525558-28525733)
chr2 (288-368)||(28525310-28525390)
chr2 (179-224)||(44945655-44945700)
chr2 (179-224)||(7747336-7747381)
chr2 (179-224)||(25540403-25540448)
chr2 (179-224)||(10823122-10823167)
chr2 (179-224)||(29422277-29422322)
chr2 (179-224)||(38005464-38005509)
chr2 (183-224)||(41220701-41220742)
chr2 (182-225)||(12864289-12864332)
chr2 (177-224)||(38962823-38962870)
chr2 (179-225)||(14169607-14169653)
chr2 (182-224)||(16325660-16325702)
chr2 (182-224)||(18902529-18902571)
chr2 (181-223)||(20612534-20612576)
chr2 (182-224)||(44548723-44548765)
chr2 (183-224)||(9360747-9360788)
chr2 (179-224)||(20116611-20116656)
chr2 (179-224)||(22593196-22593240)
chr2 (179-224)||(34722742-34722787)
chr2 (179-224)||(35946800-35946845)
chr2 (180-224)||(10702175-10702219)
chr2 (180-224)||(14853365-14853408)
[»] chr1 (31 HSPs)
chr1 (179-224)||(43959821-43959866)
chr1 (65-167)||(25485305-25485407)
chr1 (179-224)||(45361882-45361927)
chr1 (179-224)||(892302-892347)
chr1 (179-224)||(4581682-4581727)
chr1 (179-224)||(6899621-6899666)
chr1 (179-224)||(8764054-8764099)
chr1 (179-224)||(9659179-9659224)
chr1 (179-224)||(17642004-17642049)
chr1 (179-224)||(26325875-26325920)
chr1 (187-224)||(42744843-42744880)
chr1 (179-224)||(50371834-50371879)
chr1 (179-224)||(51437520-51437565)
chr1 (180-224)||(3850742-3850786)
chr1 (180-224)||(5855586-5855630)
chr1 (180-224)||(11397889-11397933)
chr1 (180-224)||(50094968-50095012)
chr1 (181-224)||(41663856-41663899)
chr1 (179-225)||(5504094-5504140)
chr1 (179-225)||(16263608-16263654)
chr1 (179-221)||(17092480-17092522)
chr1 (182-224)||(18649352-18649394)
chr1 (179-224)||(10172971-10173016)
chr1 (179-224)||(10422851-10422896)
chr1 (179-224)||(26660201-26660245)
chr1 (183-224)||(35211172-35211213)
chr1 (179-224)||(37339883-37339928)
chr1 (181-210)||(40969371-40969400)
chr1 (179-224)||(44969727-44969772)
chr1 (179-224)||(45726433-45726478)
chr1 (180-224)||(2980931-2980975)
[»] chr5 (28 HSPs)
chr5 (179-223)||(37263303-37263347)
chr5 (179-224)||(42086390-42086435)
chr5 (179-223)||(20525901-20525945)
chr5 (179-223)||(42291505-42291549)
chr5 (182-224)||(5731919-5731961)
chr5 (182-224)||(8513585-8513627)
chr5 (182-224)||(18045704-18045746)
chr5 (179-224)||(9805067-9805112)
chr5 (179-224)||(27648424-27648469)
chr5 (180-224)||(3653913-3653957)
chr5 (177-224)||(9812933-9812980)
chr5 (177-224)||(12705075-12705122)
chr5 (182-225)||(20692999-20693042)
chr5 (181-224)||(23383722-23383765)
chr5 (181-224)||(41163459-41163502)
chr5 (84-166)||(27175453-27175535)
chr5 (179-224)||(1538494-1538539)
chr5 (179-224)||(9168252-9168297)
chr5 (179-224)||(20682616-20682661)
chr5 (179-224)||(28857012-28857057)
chr5 (179-224)||(28857209-28857254)
chr5 (179-224)||(38897718-38897763)
chr5 (179-224)||(39099778-39099823)
chr5 (179-224)||(40117478-40117523)
chr5 (179-223)||(13887518-13887562)
chr5 (180-224)||(20255433-20255477)
chr5 (180-224)||(21375415-21375459)
chr5 (179-223)||(21487677-21487721)
[»] chr3 (24 HSPs)
chr3 (179-226)||(54261288-54261335)
chr3 (183-222)||(8362643-8362682)
chr3 (181-224)||(19147025-19147068)
chr3 (179-224)||(13893988-13894033)
chr3 (179-224)||(28572211-28572256)
chr3 (179-224)||(36043674-36043719)
chr3 (179-224)||(47219206-47219251)
chr3 (179-224)||(49021203-49021248)
chr3 (179-224)||(54237510-54237555)
chr3 (180-224)||(3136694-3136738)
chr3 (183-223)||(34662320-34662360)
chr3 (179-223)||(53649789-53649833)
chr3 (177-224)||(29195319-29195366)
chr3 (181-224)||(29762155-29762198)
chr3 (181-224)||(35998571-35998614)
chr3 (183-226)||(47471897-47471940)
chr3 (177-224)||(48342080-48342127)
chr3 (181-224)||(51060281-51060324)
chr3 (179-224)||(7328905-7328950)
chr3 (179-224)||(7650289-7650334)
chr3 (179-224)||(15320248-15320293)
chr3 (179-224)||(25295022-25295067)
chr3 (179-224)||(29127981-29128026)
chr3 (179-223)||(3507534-3507578)
[»] chr7 (18 HSPs)
chr7 (179-224)||(1606006-1606051)
chr7 (179-224)||(48551922-48551967)
chr7 (179-226)||(3353489-3353536)
chr7 (179-224)||(28744227-28744272)
chr7 (179-224)||(38578866-38578911)
chr7 (179-224)||(39475005-39475050)
chr7 (179-224)||(48804748-48804793)
chr7 (183-223)||(27875088-27875128)
chr7 (180-224)||(32769003-32769047)
chr7 (179-226)||(41945538-41945585)
chr7 (182-224)||(8734685-8734727)
chr7 (182-224)||(10317745-10317787)
chr7 (182-224)||(22268040-22268082)
chr7 (179-224)||(5069814-5069859)
chr7 (183-224)||(10047875-10047916)
chr7 (179-224)||(17748381-17748426)
chr7 (179-224)||(43861971-43862016)
chr7 (179-224)||(48244355-48244400)
[»] chr6 (13 HSPs)
chr6 (179-224)||(3601150-3601195)
chr6 (179-224)||(21898714-21898759)
chr6 (179-224)||(6606096-6606141)
chr6 (179-224)||(9633624-9633669)
chr6 (179-224)||(14783419-14783464)
chr6 (179-224)||(19089564-19089609)
chr6 (179-224)||(30788852-30788897)
chr6 (177-224)||(8611973-8612020)
chr6 (181-224)||(9179735-9179778)
chr6 (179-224)||(5253222-5253267)
chr6 (183-224)||(8938781-8938822)
chr6 (179-224)||(13584445-13584490)
chr6 (183-223)||(8149797-8149837)
[»] chr4 (26 HSPs)
chr4 (179-224)||(53599127-53599172)
chr4 (179-223)||(40780861-40780905)
chr4 (179-226)||(42722574-42722621)
chr4 (180-226)||(45721154-45721200)
chr4 (179-224)||(2559374-2559419)
chr4 (183-224)||(4738689-4738730)
chr4 (179-224)||(7246645-7246690)
chr4 (179-224)||(29895854-29895899)
chr4 (179-224)||(36145214-36145259)
chr4 (179-224)||(38166094-38166139)
chr4 (179-224)||(38168323-38168368)
chr4 (101-146)||(46333848-46333893)
chr4 (179-223)||(6032643-6032687)
chr4 (67-143)||(23630785-23630861)
chr4 (179-218)||(8889089-8889128)
chr4 (177-224)||(18531584-18531631)
chr4 (177-224)||(52950147-52950194)
chr4 (179-213)||(3507337-3507371)
chr4 (179-225)||(15829766-15829812)
chr4 (182-224)||(16450370-16450412)
chr4 (177-223)||(33647786-33647832)
chr4 (183-224)||(2686454-2686495)
chr4 (179-224)||(6779278-6779323)
chr4 (185-222)||(21429374-21429411)
chr4 (179-224)||(47682381-47682426)
chr4 (180-224)||(48834699-48834743)
[»] scaffold0011 (2 HSPs)
scaffold0011 (179-226)||(224382-224429)
scaffold0011 (179-223)||(186582-186626)
[»] chr8 (12 HSPs)
chr8 (181-224)||(24837310-24837353)
chr8 (177-224)||(36662468-36662515)
chr8 (182-224)||(3418512-3418554)
chr8 (181-223)||(4479296-4479338)
chr8 (179-224)||(10927672-10927717)
chr8 (180-220)||(4772054-4772094)
chr8 (179-219)||(13357960-13358000)
chr8 (179-223)||(15884556-15884600)
chr8 (177-224)||(2964140-2964187)
chr8 (179-224)||(6100538-6100583)
chr8 (179-224)||(43032967-43033012)
chr8 (177-217)||(24938568-24938608)
[»] scaffold0041 (1 HSPs)
scaffold0041 (182-224)||(25153-25195)
[»] scaffold0009 (2 HSPs)
scaffold0009 (179-225)||(42830-42876)
scaffold0009 (183-223)||(9511-9551)
[»] scaffold0016 (1 HSPs)
scaffold0016 (181-224)||(8700-8743)
[»] scaffold0004 (1 HSPs)
scaffold0004 (181-224)||(7834-7877)
[»] scaffold0002 (1 HSPs)
scaffold0002 (181-224)||(319489-319532)
[»] scaffold0291 (1 HSPs)
scaffold0291 (179-224)||(6920-6965)
[»] scaffold0079 (1 HSPs)
scaffold0079 (183-224)||(8232-8273)
[»] scaffold0010 (1 HSPs)
scaffold0010 (179-224)||(155710-155755)
[»] scaffold0376 (1 HSPs)
scaffold0376 (177-225)||(12733-12781)
[»] scaffold0155 (1 HSPs)
scaffold0155 (179-223)||(19320-19364)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 28525733 - 28525558
Alignment:
Q  1 taattttactctttcttgattatatttgtattttttaataaagagatggtcnnnnnnnnnnnnnagggctgataatttacgaccacctaaaattagtaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||| ||||||||||||||||||||||||||||    
T  28525733 taattttactctttcttgattatatttgtattttttaataaagagatggtcatatatatatataagggctgttaatttacgaccacctaaaattagtaaa 28525634  T
Q  101 gagtaaattaacaacctacacccacttggattttactaaaaaaccactaatctttgttatttaaaacttatactta 176  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||||||||||||||||    
T  28525633 gagtaaattaacaacctacacccacttagattttactaaaatcccattaatctttgttatttaaaacttatactta 28525558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 28525390 - 28525310
Alignment:
Q  288 gagatgatcgaatttaaaaatgtattgaacttgattgacggcaatcaccatttcccgtgatcaatgtattgtgtgtaccac 368  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  28525390 gagatgatcgaatttaaaaatttattgaactagattgactgcaatcaccatttcccgtgatcaatgtactgtgtgtaccac 28525310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 44945655 - 44945700
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  44945655 ccggattagtcgcccacctttagtggatcggaaaccggtgcgaaag 44945700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 7747336 - 7747381
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  7747336 ccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaag 7747381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 25540448 - 25540403
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  25540448 ccggattagtcgtccacctttggtgggtcggaaaccggtgcgaaag 25540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10823122 - 10823167
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  10823122 ccggattagtcgcccaccttttgtgggtcggaaaccggtgcgaaag 10823167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29422277 - 29422322
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||    
T  29422277 ccggattagtcgtccacctttgatggatcggaaatcggtgcgaaag 29422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 38005464 - 38005509
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||    
T  38005464 ccggattagtcgcccacctttggtggatcggaaactggtgcgaaag 38005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 41220701 - 41220742
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  41220701 attagtcgttcacctttagtgggtcggaaaccggtgcgaaag 41220742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 12864289 - 12864332
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    ||||||||||||||| || |||| ||||||||||||||||||||    
T  12864289 gattagtcgtccaccattggtgggtcggaaaccggtgcgaaagt 12864332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 38962823 - 38962870
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||||| |||| || ||||| ||||||||||    
T  38962823 aaccggattagtcgtccacctttggtgggtcagaaactggtgcgaaag 38962870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 14169653 - 14169607
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    |||||||||||||| ||| || |||| ||||||||||||||||||||    
T  14169653 ccggattagtcgtctaccattggtgggtcggaaaccggtgcgaaagt 14169607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 16325660 - 16325702
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  16325660 gattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 16325702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 18902571 - 18902529
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||| |||||||| |||| |||||||||||||||||||    
T  18902571 gattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 18902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 20612576 - 20612534
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||||| || |||| ||||||||||||||||||    
T  20612576 ggattagtcgtccaccattggtgggtcggaaaccggtgcgaaa 20612534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 44548765 - 44548723
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  44548765 gattagtcgtccacctttgatggatcggaaactggtgcgaaag 44548723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 9360788 - 9360747
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| |||||||||||||  ||||||||||||||||||    
T  9360788 attagtcgcccacctttagtgggccggaaaccggtgcgaaag 9360747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 20116656 - 20116611
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||| |||||||||||  ||| |||||||||||||||||||    
T  20116656 ccggattagccgtccacctttgatgggtcggaaaccggtgcgaaag 20116611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 22593196 - 22593240
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||    
T  22593196 ccggattagtcgtccacctttggtgggtcgg-aaccggtgcgaaag 22593240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 34722742 - 34722787
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| ||||||||  |||||| ||||||||||||||||    
T  34722742 ccggattagtcgcccacctttgatggatcagaaaccggtgcgaaag 34722787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 35946800 - 35946845
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||| ||||||||||    
T  35946800 ccggattagtcgtccaccattggtgggtcggaaactggtgcgaaag 35946845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 10702219 - 10702175
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||| |||||||||||||| || ||||| ||||||||||    
T  10702219 cggattagtcatccacctttagtgggtcagaaactggtgcgaaag 10702175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 14853408 - 14853365
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||    
T  14853408 cggattagtcgtccatctttagtggatc-gaaatcggtgcgaaag 14853365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 43959866 - 43959821
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  43959866 ccggattagtcgcccacctttagtggatcggaaaccggtgcgaaag 43959821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 25485305 - 25485407
Alignment:
Q  65 agggctgataatttacgaccacctaaaattagtaaagagtaaattaacaacctacacccacttggattttactaaaaaaccactaatctttgttatttaa 164  Q
    |||||| |||||||||  ||||||||||| | ||| ||||||||||   || ||||||||||||  ||| ||||||||| | |||| |||||||||||||    
T  25485305 agggctaataatttacacccacctaaaatcactaatgagtaaattattcacttacacccacttgattttgactaaaaaaacgctaacctttgttatttaa 25485404  T
Q  165 aac 167  Q
    |||    
T  25485405 aac 25485407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 45361927 - 45361882
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  45361927 ccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaag 45361882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 892347 - 892302
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||    
T  892347 ccggattagtcgcccacctttggtggatcggaaatcggtgcgaaag 892302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 4581727 - 4581682
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||    
T  4581727 ccggaatagtcgtccacctttggtgggtcggaaaccggtgcgaaag 4581682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 6899621 - 6899666
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||    
T  6899621 ccggattagtcgcccacctttgatggatcggaaaccggtgcgaaag 6899666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 8764054 - 8764099
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  8764054 ccggattagtcgtccaccgttggtgggtcggaaaccggtgcgaaag 8764099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 9659224 - 9659179
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||    
T  9659224 ccggattagtcgtccacctttggtgggttggaaaccggtgcgaaag 9659179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 17642049 - 17642004
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||    
T  17642049 ccggattagtcgtccacctttggtgggtcggaaactggtgcgaaag 17642004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 26325875 - 26325920
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  26325875 ccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 26325920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 42744843 - 42744880
Alignment:
Q  187 gtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42744843 gtcgcccacctttagtggatcggaaaccggtgcgaaag 42744880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 50371879 - 50371834
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||    
T  50371879 ccggattagtcgcccatctttggtggatcggaaaccggtgcgaaag 50371834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 51437520 - 51437565
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||    
T  51437520 ccggattagtcatccacctttggtgggtcggaaaccggtgcgaaag 51437565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 3850786 - 3850742
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||    
T  3850786 cggattagtcgcccacctttaatgggtcggaaaccggtgcgaaag 3850742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 5855586 - 5855630
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||    
T  5855586 cggattagtcgttcacctttagtgggtcggaaaccgatgcgaaag 5855630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 11397933 - 11397889
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||    
T  11397933 cggattagtcgtccacctttggtgggtcggaaatcggtgcgaaag 11397889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 50094968 - 50095012
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||    
T  50094968 cggattagtcgtccaccattagtgggtcggaaaccggtgcaaaag 50095012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 41663899 - 41663856
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  41663899 ggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 41663856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 5504094 - 5504140
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    |||||||||||||||||||||  ||| |||||||||||| |||||||    
T  5504094 ccggattagtcgtccacctttgatgggtcggaaaccggtacgaaagt 5504140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 16263608 - 16263654
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  16263608 ccggaatagtcgtccacttttgatggatcggaaaccggtgcgaaagt 16263654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 17092522 - 17092480
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcga 221  Q
    ||||||||||||||||||||| || |||| |||||||||||||    
T  17092522 ccggattagtcgtccacctttggtagatcagaaaccggtgcga 17092480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 18649394 - 18649352
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||    
T  18649394 gattaatcgcccacctttagtggattggaaaccggtgcgaaag 18649352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 10173016 - 10172971
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| ||| |||||||| |||| |||||||||||||||||||    
T  10173016 ccggattactcgcccacctttggtgggtcggaaaccggtgcgaaag 10172971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10422851 - 10422896
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||    
T  10422851 ccggattagtcgtccacctttggtaagtcggaaaccggtgcgaaag 10422896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 26660201 - 26660245
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  26660201 ccggattagtcg-ccacctttggtgggtcggaaaccggtgcgaaag 26660245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 35211213 - 35211172
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||| |||| ||||||||||||| |||||    
T  35211213 attagtcgtccacctttggtgggtcggaaaccggtgtgaaag 35211172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 37339883 - 37339928
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| | |||||||||||||||||    
T  37339883 ccggattagtcgcccacctttggtgggttggaaaccggtgcgaaag 37339928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 40969371 - 40969400
Alignment:
Q  181 ggattagtcgtccacctttagtggatcgga 210  Q
    ||||||||||||||||||||||||||||||    
T  40969371 ggattagtcgtccacctttagtggatcgga 40969400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 44969727 - 44969772
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||| | || |||||||||||||||||| |||||    
T  44969727 ccggattagtcgtccatcattggtggatcggaaaccggtgtgaaag 44969772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 45726478 - 45726433
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| ||||||| |||||||||| || ||||||||||    
T  45726478 ccggattagtcgttcacctttggtggatcggagactggtgcgaaag 45726433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 2980975 - 2980931
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||  |||||||| ||||||| |||||||||||    
T  2980975 cggattagtcgtccatgtttagtgggtcggaaatcggtgcgaaag 2980931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 37263303 - 37263347
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  37263303 ccggattagtcgtccacctttattggatcggaaaccggtgcgaaa 37263347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 42086390 - 42086435
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  42086390 ccggattagtcgtccacctttggtgggtcggaaaccggtgcgaaag 42086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 20525901 - 20525945
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  20525901 ccggattagtcgtccaccattggtggatcggaaaccggtgcgaaa 20525945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 42291549 - 42291505
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||||||||||  ||||||||||||||||||||||    
T  42291549 ccggattagtcgtccacctttgatggatcggaaaccggtgcgaaa 42291505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 5731961 - 5731919
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  5731961 gattagtcgttcacctttagtgggtcggaaaccggtgcgaaag 5731919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 8513585 - 8513627
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  8513585 gattagtcgtccacctttggtgggtcggaaaccggtgcgaaag 8513627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 18045704 - 18045746
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||| |||||||||||||||||||||||||||| ||||||||    
T  18045704 gattaatcgtccacctttagtggatcggaaaccgatgcgaaag 18045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 9805067 - 9805112
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||    
T  9805067 ccggattagtcgtccacctttggtgggtcggaaacaggtgcgaaag 9805112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 27648469 - 27648424
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||    
T  27648469 ccggattagtcgtccatctttggtggatcggaaaccgatgcgaaag 27648424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 3653957 - 3653913
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||    
T  3653957 cggattagtcgtccacctttggtggatcgaaaaccggtgcaaaag 3653913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 9812933 - 9812980
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||||    
T  9812933 aaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag 9812980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 12705075 - 12705122
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||||    
T  12705075 aaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag 12705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 20692999 - 20693042
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||    
T  20692999 gattagttgtccacctttggtgggtcggaaaccggtgcgaaagt 20693042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 23383722 - 23383765
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  23383722 ggattagtcgtccacctttggtgggtcggaaactggtgcgaaag 23383765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 41163502 - 41163459
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  41163502 ggattagtcgtccaccttttgtgggtcggaaactggtgcgaaag 41163459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 27175453 - 27175535
Alignment:
Q  84 cacctaaaattagtaaagagtaaattaacaacctacacccacttggattttactaaaaaaccactaatctttgttatttaaaa 166  Q
    |||||||||| | ||| || ||||||| |||| ||||| |||||   ||| ||||||||| |||||| |||||||||||||||    
T  27175453 cacctaaaatcactaatgaataaattagcaacttacactcacttaactttgactaaaaaatcactaacctttgttatttaaaa 27175535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 1538494 - 1538539
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| ||||||||| || |||| |||||||||||||||||||    
T  1538494 ccggattaatcgtccaccattggtgggtcggaaaccggtgcgaaag 1538539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 9168297 - 9168252
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||||||| ||| ||| |||||| ||||    
T  9168297 ccggattagtcgtccacctttagtgggtcgaaaatcggtgcaaaag 9168252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 20682661 - 20682616
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| ||| ||||||||||||| | |||||||||||||||||    
T  20682661 ccggattaatcgaccacctttagtgggttggaaaccggtgcgaaag 20682616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 28857012 - 28857057
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||  ||||||| |||| |||||||||||||||||||    
T  28857012 ccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaag 28857057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 28857209 - 28857254
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||  ||||||| |||| |||||||||||||||||||    
T  28857209 ccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaag 28857254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 38897763 - 38897718
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||| | |||||||| |||||||||||||| |||||||||    
T  38897763 ccggattagttgcccacctttggtggatcggaaaccagtgcgaaag 38897718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 39099823 - 39099778
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||| ||||    
T  39099823 ccggattagtcgcccacctttggtgggtcggaaaccggtgcaaaag 39099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 40117478 - 40117523
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| |||| ||||||| |||||||| |||||||||||||||    
T  40117478 ccggattaatcgttcacctttggtggatcgaaaaccggtgcgaaag 40117523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 13887518 - 13887562
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||| ||||||||| ||| |||||| |||||||||||    
T  13887518 ccggattagtcgcccacctttaatgggtcggaacccggtgcgaaa 13887562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 20255433 - 20255477
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||| |||  |||||||| ||||||||||    
T  20255433 cggattagtcgtccacctttggtgagtcggaaactggtgcgaaag 20255477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 21375415 - 21375459
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||| ||||  ||||||||||||| |||||||||    
T  21375415 cggattagtcgtccatctttgatggatcggaaaccagtgcgaaag 21375459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 21487677 - 21487721
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  21487677 ccggattagtcgcccacctttaatgggtcgaaaaccggtgcgaaa 21487721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 54261288 - 54261335
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  54261288 ccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaagtc 54261335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 8362643 - 8362682
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaa 222  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  8362643 attagtcgtccacctttagtggatccgaaaccggtgcgaa 8362682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 19147025 - 19147068
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  19147025 ggattagtcgtccacctttggtgggtcggaaaccggtgcgaaag 19147068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 13893988 - 13894033
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||||||| |||||||||||||||    
T  13893988 ccggattagtcgcccacctttggtggatcgaaaaccggtgcgaaag 13894033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 28572256 - 28572211
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  28572256 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 28572211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 36043719 - 36043674
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  36043719 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 36043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 47219206 - 47219251
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||    
T  47219206 ccggattagtcgtccacctttgatgggtcggaaaccggtgcgaaag 47219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 49021248 - 49021203
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  49021248 ccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 49021203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 54237510 - 54237555
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||| ||||||||||| ||||||| |||||||||||||||||||    
T  54237510 ccggataagtcgtccaccattagtgggtcggaaaccggtgcgaaag 54237555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 3136738 - 3136694
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||| || | |||||||||||||||||||    
T  3136738 cggattagtcgtccacctttggttggtcggaaaccggtgcgaaag 3136694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 34662360 - 34662320
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  34662360 attagtcgtccacctttagtggattggaaaccgatgcgaaa 34662320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 53649789 - 53649833
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||    
T  53649789 ccggattagtcgttcacctttgatggatcggaaaccggtgcgaaa 53649833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 29195366 - 29195319
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||| ||||||||||||||||||||||| | |||||||||| ||||||    
T  29195366 aaccagattagtcgtccacctttagtgggttggaaaccggtacgaaag 29195319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 29762198 - 29762155
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  29762198 ggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 29762155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 35998614 - 35998571
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||| ||||||||||||||||| || ||||||||||||||||    
T  35998614 ggattaatcgtccacctttagtgggtcagaaaccggtgcgaaag 35998571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 47471897 - 47471940
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||    
T  47471897 attagtcgtccacctttggtgggtcggaaaccgatgcgaaagtc 47471940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 48342080 - 48342127
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||| ||||||||||||| |||| ||||||||||||| ||||||||||    
T  48342080 aaccagattagtcgtccatctttggtggatcggaaacaggtgcgaaag 48342127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 51060324 - 51060281
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  51060324 ggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 51060281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 7328905 - 7328950
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| ||| |||||||||||||||    
T  7328905 ccggattagtcgcccacctttggtgggtcgaaaaccggtgcgaaag 7328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 7650289 - 7650334
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| | |||||||||||||||||    
T  7650289 ccggattagtcgcccacctttggtgggttggaaaccggtgcgaaag 7650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 15320248 - 15320293
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| || ||||||||||||||||    
T  15320248 ccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag 15320293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 25295022 - 25295067
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| | |||||||||||||||||    
T  25295022 ccggattagtcgtccaccattggtgggttggaaaccggtgcgaaag 25295067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29127981 - 29128026
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||| ||||||||    
T  29127981 ccggattagtcgcccacctttggtgggtcggaaaccgatgcgaaag 29128026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 3507578 - 3507534
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||  ||||||| |||| ||||||||||||||||||    
T  3507578 ccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaa 3507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 1606006 - 1606051
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||    
T  1606006 ccggattagtcgcccacctttggtggatcggaaaccggtgcgaaag 1606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 48551922 - 48551967
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  48551922 ccggattagtcgtccacctttgatggatcggaaaccggtgcgaaag 48551967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 3353489 - 3353536
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||    
T  3353489 ccggattagtcgtccacctttgatggatcagaaaccggtgcgaaagtc 3353536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 28744227 - 28744272
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||||    
T  28744227 ccggattagtcgtccacctttggtgggtcggaaactggtgcgaaag 28744272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 38578911 - 38578866
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  38578911 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 38578866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 39475005 - 39475050
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||    
T  39475005 ccggattagtcgtccacctttagtgggtcgaaaaccagtgcgaaag 39475050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 48804748 - 48804793
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  48804748 ccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 48804793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 27875128 - 27875088
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  27875128 attagtcgtccacctttagtgggtcgaaaaccggtgcgaaa 27875088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 32769003 - 32769047
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||    
T  32769003 cggattagtcgttcacctttggtggatcggaaaccggtgtgaaag 32769047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 41945538 - 41945585
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    ||||||||||||||||||||| |||  ||||||| |||||||||||||    
T  41945538 ccggattagtcgtccacctttggtgagtcggaaatcggtgcgaaagtc 41945585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 8734727 - 8734685
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||| |||||||| |||| |||||||||||||||||||    
T  8734727 gattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 8734685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 10317787 - 10317745
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||  ||||||| ||||||||||||||||||||||||    
T  10317787 gattagtcgctcacctttggtggatcggaaaccggtgcgaaag 10317745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 22268082 - 22268040
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||  ||||||| ||||||||||||||||||||||||    
T  22268082 gattagtcgctcacctttggtggatcggaaaccggtgcgaaag 22268040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 5069859 - 5069814
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||| ||||||||    
T  5069859 ccggattagtcgcccacctttggtgggtcggaaaccgatgcgaaag 5069814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 10047916 - 10047875
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  10047916 attagtcgtccaccattggtgggtcggaaaccggtgcgaaag 10047875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 17748426 - 17748381
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||  ||| |||||||||| ||||||||    
T  17748426 ccggattagtcgtccacctttgttgggtcggaaaccgatgcgaaag 17748381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 43862016 - 43861971
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||| | ||||||| |||||||| |||||||||||||||    
T  43862016 ccggattagtcattcacctttggtggatcgaaaaccggtgcgaaag 43861971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 48244400 - 48244355
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||  ||||||| |||||||| |||||||||||||||    
T  48244400 ccggattagtcgctcacctttggtggatcgaaaaccggtgcgaaag 48244355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 3601150 - 3601195
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  3601150 ccggattagtcgtccacctttggtgggtcggaaaccggtgcgaaag 3601195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 21898714 - 21898759
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  21898714 ccggattagtcgttcacctttagtgggtcggaaaccggtgcgaaag 21898759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 6606141 - 6606096
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  6606141 ccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 6606096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 9633669 - 9633624
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  9633669 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 9633624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 14783464 - 14783419
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  14783464 ccggattagtcgtccaccattggtgggtcggaaaccggtgcgaaag 14783419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 19089564 - 19089609
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||    
T  19089564 ccggattagtcgtctacctttggtgggtcggaaaccggtgcgaaag 19089609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 30788897 - 30788852
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  30788897 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 30788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 8612020 - 8611973
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||||    
T  8612020 aaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag 8611973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 9179778 - 9179735
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||    
T  9179778 ggattagtcgtccacctttggtggatcggaaatcggtccgaaag 9179735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 5253267 - 5253222
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| ||| |||||||| |||| |||||||||||||||||||    
T  5253267 ccggattaatcgcccacctttggtgggtcggaaaccggtgcgaaag 5253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 8938781 - 8938822
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  8938781 attagtcgtccacctttgatgggtcggaaaccggtgcgaaag 8938822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 13584490 - 13584445
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| |||||||||||| |||| ||||||||||| |||||||    
T  13584490 ccggattaatcgtccacctttggtgggtcggaaaccggcgcgaaag 13584445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 8149837 - 8149797
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||||||| |||| | ||||||||||||||||    
T  8149837 attagtcgtccacctttggtgggttggaaaccggtgcgaaa 8149797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 53599127 - 53599172
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  53599127 ccggattaatcgttcacctttagtggatcggaaaccggtgcgaaag 53599172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 40780905 - 40780861
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  40780905 ccggattagtcgtccacctttggtgggtcggaaaccggtgcgaaa 40780861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 42722621 - 42722574
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  42722621 ccggattagtcgttcacctttagtgggtcgaaaaccggtgcgaaagtc 42722574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 45721154 - 45721200
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||    
T  45721154 cggattagtcgtccacctttaatgggttggaaaccggtgcgaaagtc 45721200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 2559374 - 2559419
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||    
T  2559374 ccggattactcgtccacctttggtgggtcggaaaccggtgcgaaag 2559419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 4738689 - 4738730
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  4738689 attagtcgtccacctttggtgggtcggaaaccggtgcgaaag 4738730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 7246690 - 7246645
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  7246690 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 7246645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29895854 - 29895899
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || |||| |||||||||||||||||||    
T  29895854 ccggattagtcgtccaccattggtggttcggaaaccggtgcgaaag 29895899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 36145259 - 36145214
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||||||  || ||||||||||||||||||||    
T  36145259 ccggattagtcgtccacctttgatgaatcggaaaccggtgcgaaag 36145214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 38166094 - 38166139
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||    
T  38166094 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 38166139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 38168323 - 38168368
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||    
T  38168323 ccggattagtcgttcacctttagtgggttggaaaccggtgcgaaag 38168368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 46333893 - 46333848
Alignment:
Q  101 gagtaaattaacaacctacacccacttggattttactaaaaaacca 146  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||    
T  46333893 gagtaagttagcaacctacacccacttggtttttactaaaaaacca 46333848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 6032687 - 6032643
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||    
T  6032687 ccggattagtcgtctacctttggtgggtcggaaaccggtgcgaaa 6032643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 23630785 - 23630861
Alignment:
Q  67 ggctgataatttacgaccacctaaaattagtaaagagtaaattaacaacctacacccacttggattttactaaaaaa 143  Q
    ||||| ||||||||  ||||||||||  | ||| |||||||||| |||| |||||||||||| ||||||| ||||||    
T  23630785 ggctgctaatttacacccacctaaaaacattaaggagtaaattagcaacatacacccacttgtattttaccaaaaaa 23630861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 8889089 - 8889128
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtg 218  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  8889089 ccggattagtcgtccacctttggtgggtcggaaaccggtg 8889128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 18531584 - 18531631
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||| ||||| |||||||||||| |||| |||||||||||||||||||    
T  18531584 aaccagattattcgtccaccttttgtgggtcggaaaccggtgcgaaag 18531631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 52950147 - 52950194
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||| |||||||||||||||||| |||| |||||||||| ||||||||    
T  52950147 aaccagattagtcgtccacctttggtgggtcggaaaccgatgcgaaag 52950194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 3507337 - 3507371
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaac 213  Q
    ||||||||||||||||||||| |||||||||||||    
T  3507337 ccggattagtcgtccacctttggtggatcggaaac 3507371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 15829766 - 15829812
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    ||||||||||| |||||| || ||||||| |||||||||||||||||    
T  15829766 ccggattagtcctccaccattggtggatcagaaaccggtgcgaaagt 15829812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 16450370 - 16450412
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||||||| || | |||||||||||||||||||    
T  16450370 gattagtcgtccacctttggtaggtcggaaaccggtgcgaaag 16450412  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 33647786 - 33647832
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||| |||||||||| || |||| |||||||||||||||||||||||    
T  33647786 aaccagattagtcgttcatctttggtggatcggaaaccggtgcgaaa 33647832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 2686495 - 2686454
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  2686495 attagtcgtccaccttttgtgggttggaaaccggtgcgaaag 2686454  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 6779278 - 6779323
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||| ||| ||||||| ||| ||||||||    
T  6779278 ccggattagtcgtccacctttggtgaatcggaacccgatgcgaaag 6779323  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 21429374 - 21429411
Alignment:
Q  185 tagtcgtccacctttagtggatcggaaaccggtgcgaa 222  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  21429374 tagtcgtccacctttggtgggtcggaaaccggtgcgaa 21429411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 47682426 - 47682381
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||| ||||||| |||||||| |||| |||||||||||||||||||    
T  47682426 ccgggttagtcgcccacctttggtgggtcggaaaccggtgcgaaag 47682381  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 48834743 - 48834699
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||| | |||||| |||| |||||||||||||||||||    
T  48834743 cggattagtcgcctacctttggtgggtcggaaaccggtgcgaaag 48834699  T

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Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 224382 - 224429
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagtc 226  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||    
T  224382 ccggattagtcgtccatctttggtgggtcggaaaccggtgcgaaagtc 224429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 186582 - 186626
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||| || ||||||||| ||||||||||||| ||||    
T  186582 ccggattagtcgttcatctttagtgggtcggaaaccggtgtgaaa 186626  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 24837310 - 24837353
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||    
T  24837310 ggattagtcgtccacctttggtggatcggaaactggtgcgaaag 24837353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 36662468 - 36662515
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  36662468 aaccggattagtcgtccacttttaatggatcggaaaccgatgcgaaag 36662515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 3418554 - 3418512
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  3418554 gattagtcgtccacctttagtgggtcagaaaccggtgcgaaag 3418512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 4479338 - 4479296
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  4479338 ggattagtcgtccacctttggtgggtcggaaaccggtgcgaaa 4479296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10927672 - 10927717
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||||    
T  10927672 ccggattagtcgttcacctttagtgggtcggaaaccgatgcgaaag 10927717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 4772094 - 4772054
Alignment:
Q  180 cggattagtcgtccacctttagtggatcggaaaccggtgcg 220  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  4772094 cggattagtcgtccacctttggtgggtcggaaaccggtgcg 4772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 13358000 - 13357960
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgc 219  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  13358000 ccggattagtcgtccccctttagtgggtcggaaaccggtgc 13357960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 15884600 - 15884556
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||    
T  15884600 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaa 15884556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 2964140 - 2964187
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||||| |||||||| |||| || ||||||||||||||||    
T  2964140 aaccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag 2964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 6100538 - 6100583
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||| |||||||||||| ||| |||||| ||||||||    
T  6100538 ccggattagtcgttcacctttagtgggtcgaaaaccgctgcgaaag 6100583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 43032967 - 43033012
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| || ||||||||||||||||    
T  43032967 ccggattagtcgcccacctttggtgggtcagaaaccggtgcgaaag 43033012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 24938608 - 24938568
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggt 217  Q
    ||||||||||||| |||||||||  ||||||||||||||||    
T  24938608 aaccggattagtcatccacctttgatggatcggaaaccggt 24938568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 25153 - 25195
Alignment:
Q  182 gattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  25153 gattaatcgtccacctttggtggatcggaaaccggtgcgaaag 25195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 42876 - 42830
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||    
T  42876 ccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaagt 42830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 9511 - 9551
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    ||||||||||||||||| |||| || |||||||||||||||    
T  9511 attagtcgtccacctttggtgggtcagaaaccggtgcgaaa 9551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 8743 - 8700
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  8743 ggattagtcgtccacctttggtgggtcggaaactggtgcgaaag 8700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 7877 - 7834
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||    
T  7877 ggattagtcgcccacctttggtggatcggaaaccggtacgaaag 7834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 319489 - 319532
Alignment:
Q  181 ggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||    
T  319489 ggattagtcgtccacctttggtggggcggaaaccggtgcgaaag 319532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 6920 - 6965
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||  ||||||| |||| |||||||||||||||||||    
T  6920 ccggattagtcgctcacctttggtgggtcggaaaccggtgcgaaag 6965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 8232 - 8273
Alignment:
Q  183 attagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  8232 attagtcgtccacctttggtaggtcggaaaccggtgcgaaag 8273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 155755 - 155710
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaag 224  Q
    |||||||||||| |||||||| |||| |||||| ||||||||||||    
T  155755 ccggattagtcgcccacctttggtgggtcggaagccggtgcgaaag 155710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 12733 - 12781
Alignment:
Q  177 aaccggattagtcgtccacctttagtggatcggaaaccggtgcgaaagt 225  Q
    |||||||||||||| ||||||||  ||| || |||||||||||||||||    
T  12733 aaccggattagtcgcccacctttgatgggtcagaaaccggtgcgaaagt 12781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 19320 - 19364
Alignment:
Q  179 ccggattagtcgtccacctttagtggatcggaaaccggtgcgaaa 223  Q
    |||||||||||| |||   ||||||||||||||||||||||||||    
T  19320 ccggattagtcggccattattagtggatcggaaaccggtgcgaaa 19364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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