View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_low_49 (Length: 387)
Name: NF11787_low_49
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33628478 - 33628614
Alignment:
| Q |
1 |
atccatgaagtttgcatgcaaaattgaaagaaaaattattgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628478 |
atccatgaagtttgcatgcaaaattgaaagaaaaattgttgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaa |
33628577 |
T |
|
| Q |
101 |
ttcagttttgtttagatttgataaaatctatcattca |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33628578 |
ttcagttttgtttagatttgataaaatctataattca |
33628614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 33624571 - 33624844
Alignment:
| Q |
2 |
tccatgaagtttgcatgcaaaattgaaagaaaaat-tattgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaa-a |
99 |
Q |
| |
|
||||||||||||| || |||| ||||||||||| | ||||| |||| ||||||| | ||||| ||||||||||||||| || ||| ||||||| | | |
|
|
| T |
33624571 |
tccatgaagtttgtatacaaacatgaaagaaaaaaatgttgatatattctttgaaaaaatatat--actatttcttatattagtgctatattttttcaga |
33624668 |
T |
|
| Q |
100 |
attcagttttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtt |
199 |
Q |
| |
|
| ||| | ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
33624669 |
agtcaatgttgcttagatttgatgaaatctataattcatagttgttaggagttcacttgtgttaaaggttagttaagaagtgtgttaataattgagagtt |
33624768 |
T |
|
| Q |
200 |
tttagcaagttaattagcatgtgtgagtgtatat----ttaacaccacaatgcaataagaatgtaatcttcatgat |
271 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
33624769 |
tttagcaagttaattagaatgtgtgagtgtatataagcttaacaccacaatgcaattagaatgaaattttcatgat |
33624844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 12059882 - 12059786
Alignment:
| Q |
108 |
ttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttag |
204 |
Q |
| |
|
|||||| |||||||| ||||| || |||||||||||||| ||||| |||||||||| | |||||||||||||||||||| || |||||| |||||| |
|
|
| T |
12059882 |
ttgtttggatttgatcaaatccataattcatagttgttacgagtttacttgtgttacaggttagttaagaagtttgttattagatgagagattttag |
12059786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 12053171 - 12053055
Alignment:
| Q |
115 |
gatttgataaaa-tctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttagcaagttaat |
213 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| |||||||||| | ||||||||||| ||||| || |||||| |||||||||||| | |
|
|
| T |
12053171 |
gatttgataaaaatccataattcatagttgttaggagtttacttgtgttaca----agttaagaagtatgttagtagttgagaaattttagcaagtttct |
12053076 |
T |
|
| Q |
214 |
tagcatgtgtgagtgtatatt |
234 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
12053075 |
tagtaattgtgagtgtatatt |
12053055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University