View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_50 (Length: 385)
Name: NF11787_low_50
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 2308904 - 2308547
Alignment:
| Q |
18 |
cccaccatgaaacacaatactcggaaaggtcttgctgtttatactctatatctataatgttgatatagggcagtcagtattcatatatatgattagtgtg |
117 |
Q |
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| T |
2308904 |
cccaccatgaaacacaatactcggaaaggtcttgctgtttatactctatatctataatgttgatatagggcagtcagtattcatatatatgattagtgtg |
2308805 |
T |
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| Q |
118 |
agttagatgtcctcctgtcgcttttgannnnnnnnnnnngaaacggaaaattttattctcatcgagatgtacaaaaattgtaccactcgcaaatagaaac |
217 |
Q |
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| T |
2308804 |
agttagatgtcttcctgtcgcttttgatttttttttttttgaacggcaaattttattctcgtcgagatgtacaaaaattgtaccactcgcagatagaaac |
2308705 |
T |
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| Q |
218 |
ggaaagataaataatacaaacgtgccgcatatatacggaacaccaaaacgtactaccccaaggaaaaaacaccacgctaaaaaactcaaaggaggtaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2308704 |
ggaaagataaataatacaaacgtgccgcatatatacggaacaccaaaacgtactaccccaaggaaaaaacaccacgctaaaaaactcaaaggaggtaatc |
2308605 |
T |
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| Q |
318 |
atgatgctactatatgcaactaaggaaagggaaaatcaacaatacatgacagtctctg |
375 |
Q |
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| T |
2308604 |
atgatgctactatatgcaactaaggaaagggaaaatcaacaatacatgacagtctctg |
2308547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 2317380 - 2317283
Alignment:
| Q |
47 |
tcttgctgtttatactctatatctataatgttgatatagggcagtcagtattcatatatatgattagtgtgagttagatgtcctcctgtcgcttttga |
144 |
Q |
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| T |
2317380 |
tcttgctgtttatactctatatctataatgttgatatagggcagtcagtattaatatatatgattagtgtgagttagatgtcctcctgtcgcttttga |
2317283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 348
Target Start/End: Original strand, 49014632 - 49014797
Alignment:
| Q |
186 |
gtacaaaaattgtaccactcgcaaatagaaa---cggaaagataaataatacaaacgtgccgcatatatacggaacaccaaaacgtactaccccaaggaa |
282 |
Q |
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||||||||| |||||| |||||||| | ||| | |||||| | | |||||||| |||||||||||| || |||||||| || || ||||||| ||| |
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| T |
49014632 |
gtacaaaaactgtaccgctcgcaaaaaaaaaaaacagaaagaaatagaatacaaaagtgccgcatatagaccgaacaccataaaccaccaccccaaagaa |
49014731 |
T |
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| Q |
283 |
aa--aacaccacgctaaaaaactcaaaggaggtaatcatgatgctactatatgcaactaaggaaaggg |
348 |
Q |
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| T |
49014732 |
aagaaacaccacactaaaaacc--aaaggaggtaaacatgatgcttctatatgcaactaaggaaaggg |
49014797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 6246181 - 6246149
Alignment:
| Q |
220 |
aaagataaataatacaaacgtgccgcatatata |
252 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
6246181 |
aaagataaataatacaaaagtgccgcatatata |
6246149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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