View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_51 (Length: 382)
Name: NF11787_low_51
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_51 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 50999684 - 51000057
Alignment:
| Q |
10 |
gcataggactcccaaaatttggaatatatgtacactttaacaaggattcataaaggaaatcaaggcagagtgtcaaagtttaaaaatagagttgataatt |
109 |
Q |
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| T |
50999684 |
gcataggactcccaaaatttggaatatatgtacactttaacaaggattcataaaggaaatcaaggcagagtgtcaaagtttaaaaatatagttgataatt |
50999783 |
T |
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| Q |
110 |
gcaattaccacacctgattaacattctgataattgtccgatctccatgatgaaataatggggttcctcaataactgagaaaatcctaaat-nnnnnnnnt |
208 |
Q |
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| T |
50999784 |
gcaattaccacacctgattaacattctgataattgtccgatctccatgatgaaataatggggttcctcattaactgagaaaatcctaaataaaaaaaaat |
50999883 |
T |
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| Q |
209 |
tcccatgttcaaaaatccaaacaaaattggcattataaacagacatagcagggaaaatttcctattcttttccaccactaaccggtagcttcatgtgcaa |
308 |
Q |
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| T |
50999884 |
tcccatgtttaaaaatccaaacaaaattggcattatagacagacatagcaggcaaaatttcctattcttttccacaactaaccggtagcttcatgtgcaa |
50999983 |
T |
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| Q |
309 |
gctgaggtgcacaatgatgtatggtactgttggttgattgagaatgggaatagacttgagaaggcttctgtaac |
382 |
Q |
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| T |
50999984 |
gctgaggtgcacaatgatgtatggaactgttggttgattgagcatgagaatagacttgagaaggattctgtaac |
51000057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 22393310 - 22393253
Alignment:
| Q |
293 |
gtagcttcatgtgcaagctgaggtgcacaatgatgtatggtactgttggttgattgag |
350 |
Q |
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| T |
22393310 |
gtagcttcatgtgcaagttgaggtgcacaatgatgtatggaattgctggtagattgag |
22393253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 22393505 - 22393540
Alignment:
| Q |
302 |
tgtgcaagctgaggtgcacaatgatgtatggtactg |
337 |
Q |
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| T |
22393505 |
tgtgcaagctgaggtgcacaatgatgtatggaactg |
22393540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 22393454 - 22393491
Alignment:
| Q |
154 |
catgatgaaataatggggttcctcaataactgagaaaa |
191 |
Q |
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| T |
22393454 |
catgatgaaataaaggggttcctcaataactcagaaaa |
22393491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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