View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_54 (Length: 376)
Name: NF11787_low_54
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 53637506 - 53637839
Alignment:
| Q |
17 |
catatttaggctttttcttgagtgcttagtagcttgaaaaggtgatagaaaaggaaagaagcaatgtagaataataattggtttggatgttggagctaga |
116 |
Q |
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| T |
53637506 |
catatttaggctttttcttgagtgcttagtagcttgaaaaggtgatagaaaaggaaagaagcaatgtagaataataattggtttggatgttggagctaga |
53637605 |
T |
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| Q |
117 |
atgcagaaatgatcg--tatatatacacatgattaaagaggtaagagaagattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcg |
214 |
Q |
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| T |
53637606 |
atgcagaaatgatcgtatatatatacacatgattaaagaggtaagagaagattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcg |
53637705 |
T |
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| Q |
215 |
ccacgtgaatcattagcgcctggccgcatatattatgttacaataattttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaat |
314 |
Q |
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| T |
53637706 |
ccacgtgaatcattagcgtctggccgc--atattatgttacaataattttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaat |
53637803 |
T |
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| Q |
315 |
ctgactatagaaatttagttttaactattaaatcaa |
350 |
Q |
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| T |
53637804 |
ctgactatagaaatttagttttaactattacatcaa |
53637839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 53652206 - 53652289
Alignment:
| Q |
90 |
ataattggtttggatgttggagctagaatgcagaaatgatcgtatatatacacatgattaa---agaggtaagagaagattaca |
170 |
Q |
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| T |
53652206 |
ataactggtttggatgctggagctagaatgaacaaacgatgatatatatacacatgattattatacaggtaagagaagattaca |
53652289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 53652314 - 53652379
Alignment:
| Q |
180 |
gaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagcgcctggccgcatat |
245 |
Q |
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| T |
53652314 |
gaagatatcacacaggctgtgaaaatccgccagcgccacgtgaagcatgaccgtttggccgcatat |
53652379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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