View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_low_55 (Length: 375)
Name: NF11787_low_55
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_55 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 41748286 - 41747925
Alignment:
| Q |
1 |
tcattttcacattcacgtaaagattcagtactcattggaacgataacattgtcttttactgttacggattcacctccttctgaggaagaagtacaacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748286 |
tcattttcacattcacgtaaagattcagtactcattggaacgataacattgtcttttactgttacggattcacctccttctgaggaagaagtacaacatt |
41748187 |
T |
|
| Q |
101 |
gaagtactgacgtggcagaaacaacgcattcatcgctgctggagtttataacaaccttctttgtcgtgggttgaatgaaattcgtaagcgcgtctgcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748186 |
gaagtactgacgtggcagaaacaacgcattcatcgctgctggagtttataacaaccttctttgtcgtgggttgaatgaaattcgtaagcgcgtctgcacc |
41748087 |
T |
|
| Q |
201 |
acgtatttcaatggcggctttatcatactccatagcagcttcttcagcagtgttgtaagttcccaaccaccgtcgaaatttgagtttggggtctcttatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748086 |
acgtatttcaatggcggctttatcatactccatagcagcttcttcagcagtgttgtaagttcccaaccaccgtcgaaatttgagtttggggtctcttatc |
41747987 |
T |
|
| Q |
301 |
tccgccgcccattttccccaaggtctttgtctcactccacgatatttcttcccggtgcaaat |
362 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
41747986 |
tccgccgcccattttccccaaggtctctgtctcactccacgatatttcttcccggtgtaaat |
41747925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 8585005 - 8584973
Alignment:
| Q |
237 |
agcttcttcagcagtgttgtaagttcccaacca |
269 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
8585005 |
agcttcttcagcactgttgtaagttcccaacca |
8584973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 2361307 - 2361369
Alignment:
| Q |
289 |
gggtctcttatctccgccgcccattttccccaaggtctttgtctcactccacgatatttcttc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
2361307 |
gggtctcttatctccgccgcccattttccccatggtctctgcctcactccacggtatttcttc |
2361369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 13409927 - 13409881
Alignment:
| Q |
292 |
tctcttatctccgccgcccattttccccaaggtctttgtctcactcc |
338 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||||||||||||||| |
|
|
| T |
13409927 |
tctcttatttctgctgcccattttccccatggtctttgtctcactcc |
13409881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University