View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_61 (Length: 357)
Name: NF11787_low_61
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 36 - 339
Target Start/End: Complemental strand, 52609878 - 52609575
Alignment:
| Q |
36 |
agaagaaagaaaaacaaaaattcacttagaaggcaagatccacacttatatacaatatacaataaatctgaaaaatgtgattcattctccttaaatcgac |
135 |
Q |
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| T |
52609878 |
agaagaaagaaaaacaaaaactcacttagaaggcaagatccacacttatatacaatatacaataaatctggaaaatgtgattcattctccttaaatcgac |
52609779 |
T |
|
| Q |
136 |
aaattacatattaacataaaattcaataatcccaacctttgccacaaacaaacgcactcgcaaatatcacaccttcatcaaacatcctttgacgagtgtc |
235 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52609778 |
aaattacatattgacataaaattcaataatcccaacctttgccacaaacaaacgcactcgcaaatatcacaccttcatcaaacatcctttgacgagtgtc |
52609679 |
T |
|
| Q |
236 |
ctcacgcgcgatacaaagcgacaactcaaaaaacataattaaccgacacagtcattatgcatgaaatctaaggctattttgaaatgaaaagacatgtccc |
335 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52609678 |
ctcacgggcgatacaaagcgacaactcaaaaaacataattagccgacacagtcattatgcatgaaatctaaggctattttgaaatgaaaagacatgtccc |
52609579 |
T |
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| Q |
336 |
ttag |
339 |
Q |
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|||| |
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| T |
52609578 |
ttag |
52609575 |
T |
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