View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_62 (Length: 350)
Name: NF11787_low_62
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 25058608 - 25058285
Alignment:
| Q |
6 |
accaattagattcttaattcctaacttttatgtaatatataaacaaattgttgtaatcaatccagtgatgcatttgggaaagcaataaggacaaatgaag |
105 |
Q |
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| T |
25058608 |
accaattagattcttaattcctaacttttctgtaatatataaacaaattgttgtaatcaatccagtgatgcatttgggaaagcaataaggacaaatgaag |
25058509 |
T |
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| Q |
106 |
ttcgtaaaaaatattcagatgcacttttagatatgtgtagtgaggatgatatgaatatcaaggccattgatttgtggtctttaattcagagaagagaaga |
205 |
Q |
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| T |
25058508 |
ttcgtaaacaatattcagatgcacttttaaatatgtgtagtca------tatgaacatcaaggccattgatttgtggtctttaattcagagaagagatga |
25058415 |
T |
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| Q |
206 |
ttggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccctatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtg |
305 |
Q |
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| T |
25058414 |
ttggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccctatattaataaatatatatcaaatttgcatttcaatgatttaattagatg |
25058315 |
T |
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| Q |
306 |
atttgattattttttagtgatggaattcat |
335 |
Q |
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| T |
25058314 |
atttggttattttttagtgatggaattcat |
25058285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 25062757 - 25062588
Alignment:
| Q |
67 |
ccagtgatgcatttgggaaagcaataaggacaaatgaagttcgtaaaaaatattcagatgcacttttagatatgtgtagtgaggatgatatgaatatcaa |
166 |
Q |
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| T |
25062757 |
ccagtaatgaatttgggcaaccaataagaacaaatgaagattgtggaatatattccgatgcatgtttggatatgtgtcgtgag------atgaacataaa |
25062664 |
T |
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| Q |
167 |
ggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcat |
242 |
Q |
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| T |
25062663 |
ggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
25062588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 337
Target Start/End: Complemental strand, 25084283 - 25084109
Alignment:
| Q |
156 |
atgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
255 |
Q |
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| T |
25084283 |
atgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctc--atttgtatgcacc |
25084186 |
T |
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| Q |
256 |
tatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtgatttgattattttttagtgatggaattcatct |
337 |
Q |
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| T |
25084185 |
ta-actaaa----atatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatct |
25084109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 246
Target Start/End: Complemental strand, 25090670 - 25090485
Alignment:
| Q |
55 |
gttgtaatcaatccagtgatgcatttgggaaagcaataaggacaaatgaagttcgtaaaaaatattcagatgcacttttagatatgtgtagtgaggatga |
154 |
Q |
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| T |
25090670 |
gttgcaatgaatccagtgatgaatttgggcaaccattgaggacaaatgaagattgtcgaatatatttagaagcatgtttggatttgtgtcgtgag----- |
25090576 |
T |
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| Q |
155 |
tatgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatat |
246 |
Q |
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| T |
25090575 |
-atgaaaataaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctcgtatat |
25090485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 337
Target Start/End: Complemental strand, 25071377 - 25071202
Alignment:
| Q |
156 |
atgaatatcaaggccattgatttgtggtctttaattcagagaagagaagattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
255 |
Q |
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| T |
25071377 |
atgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcattt--gtatgcacc |
25071280 |
T |
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| Q |
256 |
tatattaaaaaatatatatcaaatatgcatttcaatgatttaattaggtgatttgattattttttagtgatggaattcatct |
337 |
Q |
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| T |
25071279 |
aaaactaaaa----tattacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatggagttcatct |
25071202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 25062543 - 25062499
Alignment:
| Q |
293 |
atttaattaggtgatttgattattttttagtgatggaattcatct |
337 |
Q |
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| T |
25062543 |
atttaattaggtggtttgattatttcttagtgatggagttcatct |
25062499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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