View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_low_65 (Length: 324)
Name: NF11787_low_65
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 11677206 - 11677505
Alignment:
| Q |
1 |
ctgacactgaaacataacaaattcaagttggaaataaacttaatctcgagtacatgttttcataggttgagcgacctccctttaaagacgaaacatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
11677206 |
ctgacactgaaacataacaaattcaagttggaaataaacttaatcttaagtacatgttttcataggttgagcgacctcccttcaaagacaaaacatcaat |
11677305 |
T |
|
| Q |
101 |
attctcccgtcaatggcagaagcattagagaaagtttgttgttgaatcagtcaaccatgtatgtgttgatgtatgtatgtgctgatgtatgttgctgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11677306 |
attctcccgtcaatggcagaagcattagagaaagtttgttgttgaatcagtcaacc----------------atgtatgtgctgatgtatgttgctgctg |
11677389 |
T |
|
| Q |
201 |
agtttgcacactaaatatctttgcacagtacaatttgcacctacattgtctcttgtttatctctatttcaaccacatttcctatgtgaacgtctagttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11677390 |
agtttgcacactaaatatctttgcacagtacaatttgcacctccattgtctcttgtttatctctatttcaaccacatttcctatgtgaacgtctagttct |
11677489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 19473454 - 19473380
Alignment:
| Q |
224 |
cacagtacaatttgcacctacattgtctcttgtttatctctatttcaaccacatttcctatgtgaacgtctagtt |
298 |
Q |
| |
|
|||| ||||||||||| || || | ||||||||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
19473454 |
cacaatacaatttgcatctccactatctcttgtttatcgctatttcaacaacctttcctatgtgaacgtctagtt |
19473380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 19473370 - 19473337
Alignment:
| Q |
281 |
ctatgtgaacgtctagttctcatggttgttctct |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
19473370 |
ctatgtgaacgtctagttctcatggtagttctct |
19473337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 42251549 - 42251476
Alignment:
| Q |
220 |
tttgcacagtacaatttgcacctacattgtctcttgtttatctctatttcaaccacatttcctatgtgaacgtc |
293 |
Q |
| |
|
||||||||||||||| ||||||| | | ||||||| |||||| ||| ||| ||||| ||| ||||||||||||| |
|
|
| T |
42251549 |
tttgcacagtacaatctgcacctccgtcgtctcttatttatcgctacttctaccactttttctatgtgaacgtc |
42251476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University