View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_low_66 (Length: 320)

Name: NF11787_low_66
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_low_66
NF11787_low_66
[»] chr4 (3 HSPs)
chr4 (1-315)||(26720375-26720690)
chr4 (18-284)||(52528836-52529103)
chr4 (283-315)||(14586729-14586761)
[»] chr1 (1 HSPs)
chr1 (1-284)||(45118199-45118485)
[»] chr2 (1 HSPs)
chr2 (1-284)||(2985550-2985838)
[»] chr8 (1 HSPs)
chr8 (18-284)||(13863532-13863799)
[»] chr6 (1 HSPs)
chr6 (53-99)||(23073266-23073312)
[»] scaffold0005 (1 HSPs)
scaffold0005 (283-315)||(230613-230645)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 26720690 - 26720375
Alignment:
Q  1 agcttctccgaattcacattcggtttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720690 agcttctccgaattcacattcggcttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaa 26720591  T
Q  101 -tgaccacatagaaggattaagatttttcttttccaagaagaagaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatctgtg 199  Q
     |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720590 atgacaacaaagaaggattaagatttttcttttccaagaagaagaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatctgtg 26720491  T
Q  200 ttacaatgttttctttttccaatgttagaagatagtgaattgcatcattgggaatacgcgagctcataatggaaatgtgggattttgaaattgaagtgtg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720490 ttacaatgttttctttttctaatgttagaagatagtgaattgcatcattgggaatacgcgagctcataatggaaatgtgggattttgaaattgaagtgtg 26720391  T
Q  300 tattgtgatctgtgct 315  Q
    ||||||||| ||||||    
T  26720390 tattgtgatttgtgct 26720375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 52528836 - 52529103
Alignment:
Q  18 attcggtttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaatgaccacatagaaggat 117  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||    
T  52528836 attcggtttcacattcgcatttgggtaccagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaatgacaatagagaatgat 52528935  T
Q  118 taagatttttcttttccaagaagaagaa------agaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatctgtgttacaatgtttt 211  Q
    |||||||||| ||||  |||||||||||      ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||| |||    
T  52528936 taagatttttttttttgaagaagaagaagaagagagaaggatgaatgatggaaagggtttcaaggaaaggagcattttaggatctgtgttacaatgcttt 52529035  T
Q  212 ctttttccaatgttagaagatagtgaattgcatcattgggaatacgcgagctcataatggaaatgtgggattt 284  Q
    ||||||||||||||| ||||||||| | ||||||||||| |||     |||||||||||||||||||||||||    
T  52529036 ctttttccaatgttaaaagatagtggaatgcatcattggaaat-----agctcataatggaaatgtgggattt 52529103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 14586729 - 14586761
Alignment:
Q  283 tttgaaattgaagtgtgtattgtgatctgtgct 315  Q
    |||||||||||||||||||||||||| ||||||    
T  14586729 tttgaaattgaagtgtgtattgtgatttgtgct 14586761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 45118199 - 45118485
Alignment:
Q  1 agcttctccgaattcacattcggtttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45118199 agcttctccgaattcacattcggtttcacattcgcatttgggtatcagataaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaa 45118298  T
Q  101 -tgaccacatagaaggattaagatttttcttttcc--aagaagaagaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatctg 197  Q
     |||| | | ||||||||| || ||||| ||||    | |||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45118299 gtgacaatagagaaggattgagttttttttttttttgaggaagaaaaaggaaggatgaatgatggaaagggtttgaaggaaaggagcattttacgatctg 45118398  T
Q  198 tgttacaatgttttctttttccaatgttagaagatagtgaattgcatcattgggaatacgcgagctcataatggaaatgtgggattt 284  Q
    |||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||    
T  45118399 tgttacaatgctttattttttcaatgttagaagatagtggaatgcatcattgggaatacgcaagctcataatgaaaatgtgggattt 45118485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 2985838 - 2985550
Alignment:
Q  1 agcttctccgaattcacattcggtttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2985838 agcttctccgaattcacattcggtttcacattcgcatttgggtatcagataaagtagatgggaaggaaacatggattgggaaattgagaaggggaaaaaa 2985739  T
Q  101 -tgaccacatagaaggattaagatttttcttttcc----aagaagaagaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatc 195  Q
     |||| | | ||||||||| || ||||| ||||      | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2985738 gtgacaatagagaaggattgagttttttttttttttttgaggaagaaaaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatt 2985639  T
Q  196 tgtgttacaatgttttctttttccaatgttagaagatagtgaattgcatcattgggaatacgcgagctcataatggaaatgtgggattt 284  Q
    |||||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||    
T  2985638 tgtgttacaatgctttattttttcaatgttagaagatagtggaatgcatcattgggaatacgcaagctcataatgaaaatgtgggattt 2985550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 13863532 - 13863799
Alignment:
Q  18 attcggtttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaa-tgaccacatagaagga 116  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |   |||| ||    
T  13863532 attcggtttcacattcgcatttgggtaccagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaattgagaatga 13863631  T
Q  117 ttaagatttttcttttcc-----aagaagaagaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatctgtgttacaatgtttt 211  Q
    ||||||||||| ||||       |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||    
T  13863632 ttaagattttttttttttttttgaagaagaagaaagaaggatgaatgatggaaagggtttcaaggaaaggagtattttacgatctgtgttacaatgcttt 13863731  T
Q  212 ctttttccaatgttagaagatagtgaattgcatcattgggaatacgcgagctcataatggaaatgtgggattt 284  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||     |||||||||||||||||||||||||    
T  13863732 ctttttccagtgttagaagatagtggaatgcatcattggaaat-----agctcataatggaaatgtgggattt 13863799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 23073266 - 23073312
Alignment:
Q  53 agtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaa 99  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||    
T  23073266 agtagatgggaaggaaacgtgtatggggaaattgagaagggggaaaa 23073312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 230645 - 230613
Alignment:
Q  283 tttgaaattgaagtgtgtattgtgatctgtgct 315  Q
    |||||||||||||||||||||||||| ||||||    
T  230645 tttgaaattgaagtgtgtattgtgatttgtgct 230613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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