View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_69 (Length: 301)
Name: NF11787_low_69
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 11858422 - 11858154
Alignment:
| Q |
19 |
tgatttatcaaatcatgatcaattgtttgatgttagtttgagagataatcagttaaccggtgttgttcctccgtctttaacttcccttcaaaatttaaca |
118 |
Q |
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| T |
11858422 |
tgatttatcaaatcatgatcaattgtttgatgttagtttgagagataatcagttaaccggtgttgttccaccgtctttaacttcgcttcaaagtttaaca |
11858323 |
T |
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| Q |
119 |
gttgttaatttgacaaacaattatcttcaagggtcacttcctaagtttcaaaatagtgttcgtgttgataatgatattgatagagggattaatagctttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
11858322 |
gttgttaatttgacaaacaattatcttcaagggtcacttcctaagtttcaaaatcgtgttcgtgttgataatgatattgatagagggactcatagctttt |
11858223 |
T |
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| Q |
219 |
gcactaagattgttggtcaaccgtgtagtccacttgttaatgctttgctttctgttgttgaaccctttg |
287 |
Q |
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| T |
11858222 |
gcactaaggctattggtcaaccatgtagtccacttgttaatgctttgctttctgttgttgaaccttttg |
11858154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 11835342 - 11835610
Alignment:
| Q |
19 |
tgatttatcaaatcatgatcaattgtttgatgttagtttgagagataatcagttaaccggtgttgttcctccgtctttaacttcccttcaaaatttaaca |
118 |
Q |
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| T |
11835342 |
tgatttatcgaatcatgatcaattgtttgatgttagtttgagagataatcagttaaccggtgttgttccaccgtctttaacttcgcttcaaagtttaaca |
11835441 |
T |
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| Q |
119 |
gttgttaatttgacaaacaattatcttcaagggtcacttcctaagtttcaaaatagtgttcgtgttgataatgatattgatagagggattaatagctttt |
218 |
Q |
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| T |
11835442 |
gttgttaatttgacaaacaattatcttcaagggtcagttccgaagtttcaaaatagtgttcgtgttgataatgatattgatagagggattaatagctttt |
11835541 |
T |
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| Q |
219 |
gcactaagattgttggtcaaccgtgtagtccacttgttaatgctttgctttctgttgttgaaccctttg |
287 |
Q |
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| T |
11835542 |
gtactaaggttgttggtcaaccatgtagtccggttgttaatgcgttgctttcggttgttgaaccttttg |
11835610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 11848726 - 11848993
Alignment:
| Q |
20 |
gatttatcaaatcatgatcaattgtttgatgttagtttgagagataatcagttaaccggtgttgttcctccgtctttaacttcccttcaaaatttaacag |
119 |
Q |
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||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| ||| | || |
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| T |
11848726 |
gatttttcaaatcatgatcaattgtctgaagttagtttcagagataatcagttaaccggtgttgttccgcagtctttaatttcgcttcaaagtttgaaag |
11848825 |
T |
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| Q |
120 |
ttgttaatttgacaaacaattatcttcaagggtcacttcctaagtttcaaaatagtgttcgtgttgataatgatattgatagagggattaatagcttttg |
219 |
Q |
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||| |||||| |||||| |||||||||||||| |||||||||| || || |||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
11848826 |
ctgtggctttgacgaacaatcgtcttcaagggtcacctcctaagtttaaagatgatgttaaggttgataatgatatggataaagggattaatagcttttg |
11848925 |
T |
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| Q |
220 |
cactaagattgttggtcaaccgtgtagtccacttgttaatgctttgctttctgttgttgaaccctttg |
287 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11848926 |
tactaaggttgttggtcaaccatgtagtccacttgttaatgctttgctttctgttgttgaaccttttg |
11848993 |
T |
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