View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_7 (Length: 660)
Name: NF11787_low_7
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Original strand, 31009465 - 31010097
Alignment:
| Q |
18 |
ttaggctatgcaacaagtggccattttggaagattgtgcgttgatattatggtttttcttatgcaatgtggtttttgtgttagctaccttatttttattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009465 |
ttaggctatgcaacaagtggccattttggaagattgtgcgttgatatcatggtttttcttatgcaatgtggtttttgtgttagctaccttatttttattt |
31009564 |
T |
|
| Q |
118 |
ccactactttgatacatcttagtcataatacaaactcatcatctttattgggtttttcaccaaaggnnnnnnnnatttgggcttgtttcccttttcaatt |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31009565 |
ccactactttgatacatcttagtcacaatacaaactcatcatctttattgggtttttcaccaaaggttttttttatttgggcttgtttcccttttcaatt |
31009664 |
T |
|
| Q |
218 |
gggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaatggttgaggat |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009665 |
gggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaatggttgaggat |
31009764 |
T |
|
| Q |
318 |
gtttttgtctttttggaaaataggccacctttgaagacttttggtggtttatctgnnnnnnnatatggtttaggtgtggctgtttattcttttgaaggaa |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31009765 |
gtttttgtctttttggaaaataggccacctttgaagacttttggtggtttatctgtttttctatatggtttaggtgtggctgtttattcttttgaaggaa |
31009864 |
T |
|
| Q |
418 |
taggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgtttctaatttttctgttgtatggagg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
31009865 |
taggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgttcctaatttttctattgtatggagg |
31009964 |
T |
|
| Q |
518 |
ttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggttcaattaggt |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31009965 |
ttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgattactgctttggtacaattaggt |
31010064 |
T |
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| Q |
618 |
ctttgtgtcaatctctttttcacctttcctttg |
650 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31010065 |
ctttgtgtcaatctctttttcacctttcctttg |
31010097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 440
Target Start/End: Complemental strand, 9783041 - 9782794
Alignment:
| Q |
193 |
tttgggcttgtttcccttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgatcttggagc |
292 |
Q |
| |
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|||||| |||||| || |||||||| || |||||| | || || |||||| ||||| || ||||||||||| |||||||||||||||||| || || |
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| T |
9783041 |
tttggggttgttttccatttcaattagggttgaattcgatcaaaactttgacccatttagcccctttgagtatttttgctgatgttgttgatatttctgc |
9782942 |
T |
|
| Q |
293 |
tatgggagttgtaatggttgaggatgtttttgtctttttggaaaataggccacctttgaagacttttggtggtttatctgnnnnnnnatatggtttaggt |
392 |
Q |
| |
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|| | | ||||| |||||||| ||||||||||| || || ||||||| ||| |||| | ||||| ||||| || |||||| | ||| |
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| T |
9782941 |
taagagtgttgttatggttgaagatgtttttgttttcatgcaaaatagaccaaatttggaagcttttaagggttttggtgtttttttctatggtattggt |
9782842 |
T |
|
| Q |
393 |
gtggctgtttattcttttgaaggaataggaatggttttgcctttggaa |
440 |
Q |
| |
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|| ||||||||| |||||||||| || ||||||||||||||||||||| |
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| T |
9782841 |
gtagctgtttatgcttttgaagggattggaatggttttgcctttggaa |
9782794 |
T |
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