View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_75 (Length: 270)
Name: NF11787_low_75
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_75 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 44662430 - 44662690
Alignment:
| Q |
5 |
cgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataagtca-tctataaatgtcaatcaataagagattgaattaattgtcta |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662430 |
cgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataagtcggtctataaatgtcaatcaataagagattgaattaattgtcta |
44662529 |
T |
|
| Q |
104 |
caaggtattttttggtataaaatagtatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44662530 |
caaggtattttttggtataaaatagtatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacttggttatagtctgag |
44662629 |
T |
|
| Q |
204 |
catagtgagcaattactgcatccaaattggcatctgtttcacctatggacttcgtgacatc |
264 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44662630 |
catagtgagcaattattgcatccaaattggcatctgtttcacctatggacttcgtgacatc |
44662690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 44684974 - 44685083
Alignment:
| Q |
132 |
ctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaaatt |
231 |
Q |
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||||| |||||||||| |||||||||||| ||||||||||||||| | ||||||| || ||||||||| |||||| ||||||||| |||||||||||| |
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| T |
44684974 |
ctaaatatagaaaaat--gaagcaccaaaaccctacctaagttacgtaagttgtacttgtttatagtctccgcatagcgagcaattattgcatccaaatt |
44685071 |
T |
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| Q |
232 |
ggcatctgtttc |
243 |
Q |
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||||||| |||| |
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| T |
44685072 |
ggcatctttttc |
44685083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 42919709 - 42919751
Alignment:
| Q |
17 |
gcttcaaacgatcagattcgaccaccactcaaaatccgataag |
59 |
Q |
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| T |
42919709 |
gcttcaaacgatcagagtcgcccaccactcaacatccgataag |
42919751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 29339748 - 29339633
Alignment:
| Q |
129 |
tatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaa |
228 |
Q |
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||||||||||||||||||| ||||| ||||| || ||||||||| |||| ||||||| || ||||||||| ||||||||| |||||||||||| || |
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| T |
29339748 |
tatctaaagatagaaaaatc--aagcatcaaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaattactgcatctaa |
29339651 |
T |
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| Q |
229 |
attggcatctgtttcacc |
246 |
Q |
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||||||||| |||||||| |
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| T |
29339650 |
attggcatcagtttcacc |
29339633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 29352903 - 29352795
Alignment:
| Q |
138 |
atagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaaattggcatc |
237 |
Q |
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||||| ||| || ||||| ||||| |||||||||||||| || |||||| || ||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
29352903 |
atagagaaaaatcaagcatcaaaaacctacctaagttacacaagttgtatttgtttatagtctccacatagtgagcaattactgcatctaaattggcatc |
29352804 |
T |
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| Q |
238 |
tgtttcacc |
246 |
Q |
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|||||||| |
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| T |
29352803 |
agtttcacc |
29352795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 1799287 - 1799254
Alignment:
| Q |
16 |
tgcttcaaacgatcagattcgaccaccactcaaa |
49 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
1799287 |
tgcttcaaacgatcagcttcgaccaccactcaaa |
1799254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1918498 - 1918454
Alignment:
| Q |
18 |
cttcaaacgatcagattcgaccaccactcaaaatccgataagtca |
62 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
1918498 |
cttcaaacgatcagattcgaccaccactcaacatccgatatgtca |
1918454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 18622 - 18580
Alignment:
| Q |
17 |
gcttcaaacgatcagattcgaccaccactcaaaatccgataag |
59 |
Q |
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|||||||||||||||| ||| ||||||||||| |||||||||| |
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| T |
18622 |
gcttcaaacgatcagagtcgcccaccactcaacatccgataag |
18580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 23264849 - 23264820
Alignment:
| Q |
16 |
tgcttcaaacgatcagattcgaccaccact |
45 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23264849 |
tgcttcaaacgatcagattcgaccaccact |
23264820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 36796747 - 36796715
Alignment:
| Q |
16 |
tgcttcaaacgatcagattcgaccaccactcaa |
48 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
36796747 |
tgcttcaaacgatcagatgcgaccaccactcaa |
36796715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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