View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_79 (Length: 250)
Name: NF11787_low_79
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_79 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 39295713 - 39295946
Alignment:
| Q |
17 |
agaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaat |
116 |
Q |
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| T |
39295713 |
agaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaat |
39295812 |
T |
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| Q |
117 |
ttctagctgaaattcaggacatggaaaataaccaagagagagttgaggtactaccaaagtctgacataccaacaaaaaatttgaggttgtcgattattct |
216 |
Q |
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| T |
39295813 |
ttctagctcaagttcaggacatggaaaataaccaagagaaagttgaggtactaccaaagtctgacataccaacaaaaaattcgaggttgtcgattattct |
39295912 |
T |
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| Q |
217 |
gctggatcaaggttgcacagtgtacaaaggactg |
250 |
Q |
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| T |
39295913 |
gctggatcaaggttgcacagtgtacaaaggactg |
39295946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 249
Target Start/End: Original strand, 39288869 - 39289062
Alignment:
| Q |
56 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagaga |
155 |
Q |
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| T |
39288869 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaagttcaagacatagaaaataaccaagaaa |
39288968 |
T |
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| Q |
156 |
gagttgaggtactaccaaagtctgacataccaacaaaaaatttgaggttgtcgattattctgctggatcaaggttgcacagtgtacaaaggact |
249 |
Q |
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| T |
39288969 |
aagttaaggtactaccaaaaacagaaccaccaaaaaggaagtcaaggttgtctattattctgctagatcaaggtttcacagtttacaaaggact |
39289062 |
T |
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