View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11787_low_8 (Length: 638)

Name: NF11787_low_8
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11787_low_8
NF11787_low_8
[»] chr8 (9 HSPs)
chr8 (18-636)||(39601076-39601694)
chr8 (580-636)||(7577671-7577727)
chr8 (580-638)||(44052307-44052365)
chr8 (580-636)||(7577050-7577106)
chr8 (580-636)||(27704613-27704669)
chr8 (578-636)||(27703993-27704051)
chr8 (595-636)||(43262374-43262415)
chr8 (594-638)||(39604400-39604444)
chr8 (594-638)||(39939296-39939340)
[»] chr1 (15 HSPs)
chr1 (577-638)||(46320534-46320595)
chr1 (578-637)||(50117895-50117954)
chr1 (580-638)||(253028-253086)
chr1 (579-636)||(15354641-15354698)
chr1 (578-638)||(26944411-26944471)
chr1 (579-638)||(471144-471203)
chr1 (580-638)||(20114539-20114597)
chr1 (580-638)||(32161373-32161431)
chr1 (576-638)||(51271672-51271734)
chr1 (580-636)||(32160666-32160722)
chr1 (580-638)||(44596795-44596853)
chr1 (580-637)||(46319684-46319741)
chr1 (578-638)||(253358-253418)
chr1 (580-636)||(33206086-33206142)
chr1 (594-638)||(44598987-44599031)
[»] chr6 (5 HSPs)
chr6 (579-636)||(11687392-11687449)
chr6 (579-636)||(11687975-11688032)
chr6 (580-636)||(28362817-28362873)
chr6 (577-638)||(14012455-14012516)
chr6 (578-638)||(3502718-3502778)
[»] chr2 (6 HSPs)
chr2 (579-638)||(43870202-43870261)
chr2 (580-638)||(28137791-28137849)
chr2 (580-638)||(39377635-39377693)
chr2 (580-638)||(7190031-7190089)
chr2 (580-638)||(17688220-17688278)
chr2 (580-637)||(28138367-28138424)
[»] chr7 (5 HSPs)
chr7 (580-638)||(36185637-36185695)
chr7 (577-638)||(46738733-46738794)
chr7 (580-638)||(40323712-40323770)
chr7 (576-638)||(48194654-48194716)
chr7 (577-638)||(40323199-40323260)
[»] chr4 (3 HSPs)
chr4 (580-638)||(44674099-44674157)
chr4 (580-638)||(51492006-51492064)
chr4 (577-638)||(39590649-39590710)
[»] chr3 (4 HSPs)
chr3 (577-638)||(5138348-5138409)
chr3 (595-638)||(43476140-43476183)
chr3 (580-637)||(43478912-43478969)
chr3 (594-638)||(16484537-16484581)
[»] chr5 (7 HSPs)
chr5 (580-636)||(2532584-2532640)
chr5 (578-638)||(35777096-35777156)
chr5 (580-638)||(7762324-7762382)
chr5 (578-638)||(9784231-9784291)
chr5 (577-636)||(13568158-13568217)
chr5 (580-638)||(2532020-2532078)
chr5 (580-638)||(7757259-7757317)


Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Original strand, 39601076 - 39601694
Alignment:
Q  18 caaacaagatttggtatgaaatcagctagatgttcataatcagttaaagcattccaaacagagttaatatcagcattgatagaaatctcagccttaactc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39601076 caaacaagatttggtatgaaatcagctagatgttcataatcagttaaagcattccaaacagagttaatatcagcattgatagaaatctcagccttaactc 39601175  T
Q  118 tccgttctctccaagaaaccacttgaagctcacagtgaacctcacggtcaccatcttcttctagcccattattcaaatttccacccaaatggcttctggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39601176 tccgttctctccaagaaaccacttgaagctcacagtgaacctcacggtcaccatcttcttctagcccattattcaaatttccacccaaatggcttctggg 39601275  T
Q  218 tttgcactgtgttgttgaggagagagcaatgctcttgtgaaagtggcgagggaaaaagagactcaaagataaatatgatggtttggaatgtagggaagag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39601276 tttgcactgtgttgttgaggagagagcaatgctcttgtgaaagtggcgagggaaaaagagactcaaagataaaaatgatggtttggaatgtagggaagag 39601375  T
Q  318 tgtagagaaagtgggttagctcttgaagaagaagctctgcaagcagtgatcattgaagtaagtgtgagtgtgtgaagacgaagctgagttgttgttgatg 417  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39601376 cgtagagaaagtgggttagctcttgaagaagaagctctgcaagcagtgatcattgaagtaagtgtgagtgtgtgaagacgaagctgagttgttgttgatg 39601475  T
Q  418 atgtttcatggcatgttggcataggctacacagtgcgagcattgtggccactggtttttggtttgttgttatctaattctgatgttgtttactacatttt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39601476 atgtttcatggcatgttggcataggctacacagtgcgagcattgtggccactggtttttggtttgttgttatctgattctgatgttgtttactacatttt 39601575  T
Q  518 tgcgattctgaattggtggttccaactctatacacatttctttttggaggaaaatgtcatttgagaattgctgctgccacattacataaagttgtgccac 617  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||| | ||||||||    
T  39601576 tgcgattctgaattggtggttccaactctatacacgtttctttttggaggaaaatgtcatttgagaattgctattcccacattacataaggctgtgccac 39601675  T
Q  618 tcgagtaaatgacgttttt 636  Q
     ||||||||||||||||||    
T  39601676 acgagtaaatgacgttttt 39601694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 7577727 - 7577671
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||||    
T  7577727 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgttttt 7577671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 44052365 - 44052307
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| |||||| ||| ||||||||||||||||||||    
T  44052365 gagaattgttgttcccacattacataaggttgtggcacacgagtaaatgacgtttttgc 44052307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 636
Target Start/End: Original strand, 7577050 - 7577106
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| | ||||||||||||| | ||||||||  |||||||||||||||||    
T  7577050 gagaattgctgttcccacattacataaggctgtgccacatgagtaaatgacgttttt 7577106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 27704669 - 27704613
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| | ||||||||||||| | |||||||| ||| ||||||||||||||    
T  27704669 gagaattgctgttcccacattacataaggctgtgccacacgaataaatgacgttttt 27704613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 636
Target Start/End: Original strand, 27703993 - 27704051
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||||| | ||||||||||||| | |||||||| | | ||||||||||||||    
T  27703993 ttgagaattgctgttcccacattacataaggctgtgccacacaaataaatgacgttttt 27704051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 636
Target Start/End: Original strand, 43262374 - 43262415
Alignment:
Q  595 cacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    |||||||||||| | |||||||| ||||||||||||||||||    
T  43262374 cacattacataaggctgtgccacacgagtaaatgacgttttt 43262415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 638
Target Start/End: Complemental strand, 39604444 - 39604400
Alignment:
Q  594 ccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  39604444 ccacattacataaggctgtgccacacgagtaattgacgtttttgc 39604400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 638
Target Start/End: Complemental strand, 39939340 - 39939296
Alignment:
Q  594 ccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||||| | |||| ||| ||||||||||||||||||||    
T  39939340 ccacattacataaggatgtgtcacacgagtaaatgacgtttttgc 39939296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 46320595 - 46320534
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||    
T  46320595 tttgagaattgctgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgc 46320534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 50117954 - 50117895
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttg 637  Q
    ||||||||||||| | ||||||||||||| |||||||||| |||||||||||| ||||||    
T  50117954 ttgagaattgctgttcccacattacataaggttgtgccacacgagtaaatgacatttttg 50117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 253028 - 253086
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||||||    
T  253028 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgc 253086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 15354698 - 15354641
Alignment:
Q  579 tgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    |||||||||||| | ||||||||||||| |||||| ||| ||||||||||||||||||    
T  15354698 tgagaattgctgttcccacattacataaggttgtgtcacacgagtaaatgacgttttt 15354641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 638
Target Start/End: Original strand, 26944411 - 26944471
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||| || | ||||||||||||| | |||||||| ||||||||||||||||||||    
T  26944411 ttgagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgc 26944471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 638
Target Start/End: Complemental strand, 471203 - 471144
Alignment:
Q  579 tgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||| || | ||||||||||||| |||||||||| || |||||||||||||||||    
T  471203 tgagaattgttgttcccacattacataaggttgtgccacgcgggtaaatgacgtttttgc 471144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 20114539 - 20114597
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| | |||||||| ||||||||||||||||||||    
T  20114539 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgc 20114597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 32161431 - 32161373
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| | |||||||| ||||||||||||||||||||    
T  32161431 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgc 32161373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 576 - 638
Target Start/End: Complemental strand, 51271734 - 51271672
Alignment:
Q  576 atttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||||| || | ||| ||||||||| |||||||||| || |||||||||||||||||    
T  51271734 atttgagaattgttgttcccaaattacataaggttgtgccacacgggtaaatgacgtttttgc 51271672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 636
Target Start/End: Original strand, 32160666 - 32160722
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| | ||||||||||||| | |||||||| |||||||||| |||||||    
T  32160666 gagaattgctgatcccacattacataaggctgtgccacacgagtaaatgtcgttttt 32160722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 44596795 - 44596853
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | |||||||||||||   |||||||| ||||||||||||||||||||    
T  44596795 gagaattgttgttcccacattacataagactgtgccacacgagtaaatgacgtttttgc 44596853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 46319684 - 46319741
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttg 637  Q
    |||||||| || | ||||||||||||  | |||||||| |||||||||||||||||||    
T  46319684 gagaattgttgttcccacattacatatggctgtgccacacgagtaaatgacgtttttg 46319741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 638
Target Start/End: Complemental strand, 253418 - 253358
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||| || | ||||||||| ||| | |||||||| |||||||||||| |||||||    
T  253418 ttgagaattgttgttcccacattacgtaaggctgtgccacacgagtaaatgacatttttgc 253358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 33206142 - 33206086
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| | |||||||||||||   |||||||| |||||||||||| |||||    
T  33206142 gagaattgctgttcccacattacataagactgtgccacacgagtaaatgacattttt 33206086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 638
Target Start/End: Complemental strand, 44599031 - 44598987
Alignment:
Q  594 ccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||||  |||||||||| |||||||||||| |||||||    
T  44599031 ccacattacatagggttgtgccacacgagtaaatgacatttttgc 44598987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 636
Target Start/End: Original strand, 11687392 - 11687449
Alignment:
Q  579 tgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    |||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||||    
T  11687392 tgagaattgctgttcccacattatataaagttgtgccacacgagtaaatgacgttttt 11687449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 11688032 - 11687975
Alignment:
Q  579 tgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    |||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||||    
T  11688032 tgagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgttttt 11687975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 28362873 - 28362817
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||  | ||||||||||||| | |||||||| ||||||||||||||||||    
T  28362873 gagaattgctattcccacattacataaggctgtgccacacgagtaaatgacgttttt 28362817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 14012516 - 14012455
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| || | |||||||  |||| | |||||||| ||||||||||||||||||||    
T  14012516 tttgagaattgttgttcccacatttaataaggctgtgccacacgagtaaatgacgtttttgc 14012455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 638
Target Start/End: Complemental strand, 3502778 - 3502718
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||||  |  |||||| ||||| |||||| ||| ||||||||||||||||||||    
T  3502778 ttgagaattgctatttacacatttcataaggttgtgtcacacgagtaaatgacgtttttgc 3502718  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 579 - 638
Target Start/End: Complemental strand, 43870261 - 43870202
Alignment:
Q  579 tgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||| || | ||||||||||||| |||||||||| ||||||||||||||||||||    
T  43870261 tgagaattgatgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgc 43870202  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 28137791 - 28137849
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | |||||||| |||| |||||||||| ||||||||||||||||||||    
T  28137791 gagaattgctgttcccacattatataaggttgtgccacacgagtaaatgacgtttttgc 28137849  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 39377635 - 39377693
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||||||    
T  39377635 gagaattgctgtttccacattacataaggctgtgccacacgagtaaatgacgtttttgc 39377693  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 7190089 - 7190031
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| |||||||||| ||||||||| ||||||||||    
T  7190089 gagaattgatgttcccacattacataaggttgtgccacacgagtaaattacgtttttgc 7190031  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 17688220 - 17688278
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | ||||||||||||| | |||||||| ||| ||||||||||||||||    
T  17688220 gagaattgctgttcccacattacataaggctgtgccacacgaataaatgacgtttttgc 17688278  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 28138424 - 28138367
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttg 637  Q
    ||||||||||| | |||||||||| || | | |||||| |||||||||||||||||||    
T  28138424 gagaattgctgttcccacattacaaaaggctatgccacacgagtaaatgacgtttttg 28138367  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 36185695 - 36185637
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||||||    
T  36185695 gagaattgctgtttccacattacataaggctgtgccacacgagtaaatgacgtttttgc 36185637  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 577 - 638
Target Start/End: Original strand, 46738733 - 46738794
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| || | ||||||||||||| |||||||||| |||| |||||||||||||||    
T  46738733 tttgagaattgttgttcccacattacataaggttgtgccacacgagcaaatgacgtttttgc 46738794  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 40323770 - 40323712
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | ||||||||||||| | |||||||| | ||||||||||||||||||    
T  40323770 gagaattgctgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgc 40323712  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 576 - 638
Target Start/End: Complemental strand, 48194716 - 48194654
Alignment:
Q  576 atttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||||||| | ||||||||||||| | ||||  || ||||||||||||||||||||    
T  48194716 atttgagaattgctgttcccacattacataaggctgtgatacacgagtaaatgacgtttttgc 48194654  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 577 - 638
Target Start/End: Original strand, 40323199 - 40323260
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| || | ||||||||||||| | ||||||||  ||||||||||| |||||||    
T  40323199 tttgagaattgttgttcccacattacataaggctgtgccacatgagtaaatgacatttttgc 40323260  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 44674099 - 44674157
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| |||||||||| ||||||||||||||||||||    
T  44674099 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgc 44674157  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 51492006 - 51492064
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| |||||||||| ||||||||||||||||||||    
T  51492006 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgc 51492064  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 39590710 - 39590649
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||||||| | |||||||| |||| | |||||||| ||||||||||| ||||||||    
T  39590710 tttgagaattgctgtttccacattatataaggctgtgccacacgagtaaatgatgtttttgc 39590649  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 5138409 - 5138348
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||||||| | |||||| |||||| | |||||||| ||||||||||||||||||||    
T  5138409 tttgagaattgctgttcccacatgacataaggctgtgccacacgagtaaatgacgtttttgc 5138348  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 595 - 638
Target Start/End: Original strand, 43476140 - 43476183
Alignment:
Q  595 cacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  43476140 cacattacataaggttgtgccacacgagtaaatgacgtttttgc 43476183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 43478969 - 43478912
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttg 637  Q
    |||||||| || | ||||||||||||| |||||||||| ||||||||||| |||||||    
T  43478969 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgatgtttttg 43478912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 594 - 638
Target Start/End: Complemental strand, 16484581 - 16484537
Alignment:
Q  594 ccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||||  |||||||||| |||||||||||| |||||||    
T  16484581 ccacattacatagggttgtgccacacgagtaaatgacatttttgc 16484537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 636
Target Start/End: Complemental strand, 2532640 - 2532584
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||||    
T  2532640 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgttttt 2532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 638
Target Start/End: Complemental strand, 35777156 - 35777096
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||| || | |||| |||||||| |||||||||| ||||||||||||||||||||    
T  35777156 ttgagaattgatgttcccacgttacataaggttgtgccacacgagtaaatgacgtttttgc 35777096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 580 - 638
Target Start/End: Complemental strand, 7762382 - 7762324
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  7762382 gagaattgctgttcccacattacataaggctgtgccacacgagtaattgacgtttttgc 7762324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 638
Target Start/End: Complemental strand, 9784291 - 9784231
Alignment:
Q  578 ttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||||| || | |||||||||||||||||||| ||| ||| ||||||| ||||||||    
T  9784291 ttgagaattgttgttcccacattacataaagttgtgtcacacgaataaatgatgtttttgc 9784231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 577 - 636
Target Start/End: Complemental strand, 13568217 - 13568158
Alignment:
Q  577 tttgagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgttttt 636  Q
    ||||||||||| || | ||||||||||||| | |||||||  ||||||||||||||||||    
T  13568217 tttgagaattgttgttcccacattacataaggctgtgccatacgagtaaatgacgttttt 13568158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 2532020 - 2532078
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    |||||||| || | ||||||||||||| | |||||||| | ||||||||||||||||||    
T  2532020 gagaattgttgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgc 2532078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 580 - 638
Target Start/End: Original strand, 7757259 - 7757317
Alignment:
Q  580 gagaattgctgctgccacattacataaagttgtgccactcgagtaaatgacgtttttgc 638  Q
    ||||||||||| | |||||||||||||   | |||||| ||||||||||||||||||||    
T  7757259 gagaattgctgttcccacattacataagactatgccacacgagtaaatgacgtttttgc 7757317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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