View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_81 (Length: 242)
Name: NF11787_low_81
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_81 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 3715480 - 3715256
Alignment:
| Q |
18 |
catgaccaatttaaggtacacagtctctgaaatcctaaatcgtcacacccttgatcacacattgagttaatcactgatgtgtttgcaaatatacctcctc |
117 |
Q |
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| T |
3715480 |
catgaccaatttaatgtacacagtctctgaaatcctaaatcgtcacacccttgatcacacattgagttaatcactgatgtgtttgcaaatatacctcctc |
3715381 |
T |
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| Q |
118 |
caaaaagcaagcattatcctcaacatcacttcttccactctagttgtccatctagatctatctcatatcatgacaaaattaaatatttatttaattatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3715380 |
caaaaagcaagcattatcctcaacatcacttcttccactctagttgtccatctagatctatctcatatcatgacaaaattaaatatttatttaattatta |
3715281 |
T |
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| Q |
218 |
ttatttgtgagtttaataattgtac |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
3715280 |
ttatttgtgagtttaataattgtac |
3715256 |
T |
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