View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_low_87 (Length: 229)
Name: NF11787_low_87
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 41357403 - 41357611
Alignment:
| Q |
11 |
tagcatagggtgtgtctaagtacaatttcgggaatatatatgatagagaatatatgtaatctaatgtttattaaaatattacgaagtgtacaagaaataa |
110 |
Q |
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| T |
41357403 |
tagcttagggtgtgtctaagtacaatttcgggaatatatatgatagagaatatatgtaatctaatgtttattaaaatattacgaagtgtacaagaaataa |
41357502 |
T |
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| Q |
111 |
cttccacattcacataatatagtttcattttcaatggagagattgtgaaaaaagattctcataag-nnnnnnnngttacataagattctcataagttgag |
209 |
Q |
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| T |
41357503 |
cttccacattcacataatatagtttcattttcaatggagagattgtgaaaaaagattctcataagtttttttttgttacataagattctcataagttgag |
41357602 |
T |
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| Q |
210 |
aattgatga |
218 |
Q |
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|||| |||| |
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| T |
41357603 |
aattaatga |
41357611 |
T |
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