View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11788_high_10 (Length: 671)
Name: NF11788_high_10
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11788_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 135 - 594
Target Start/End: Complemental strand, 4608087 - 4607632
Alignment:
| Q |
135 |
ttcatatgatatctaatcttaaattcaaaaagtactttcaactcacccaataacaatctaaaaaatcactgtcaaatggttccaacaacaattggaaaac |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4608087 |
ttcatatgatatctaatcttaaattcaaaaagtactttcaactcacccaataacaatctaaaaaatcactggcaaatggttccaacaacaattggaaaac |
4607988 |
T |
|
| Q |
235 |
tttctggaacaatgtgtactattacgtatgaaagatacccactaaaaaacaaagaaacccgtgagctagctagttagaaagagttttcttctagttcaaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4607987 |
tttctggaacaatgtgtactattacgtatgaaagatacccactaaaaaacaaagaaacccgtgagctag----ttagaaagagttttcttctagttcaaa |
4607892 |
T |
|
| Q |
335 |
aaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttcacatttgagtatagtttcaaaccaaaataagactatgagttaagttc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607891 |
aaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttcacatttgagtatagtttcaaaccaaaataagactatgagttaagttc |
4607792 |
T |
|
| Q |
435 |
tgcaaccaaataataataacaccactgaacatatagtacactgcatattttgctgtgaaattgtactatacattaaaagtcttataccaactcaaaaata |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607791 |
tgcaaccaaataataataacaccactgaacatatagtacactgcatattttgctgtgaaattgtactatacattaaaagtcttataccaactcaaaaata |
4607692 |
T |
|
| Q |
535 |
gttactttatataagcttctttgtccccactaataatccaaaatagggtcattgataatg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607691 |
gttactttatataagcttctttgtccccactaataatccaaaatagggtcattgataatg |
4607632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4608221 - 4608132
Alignment:
| Q |
1 |
ccaacagttactaaaacattcaaaatctaaaacacctacatagtaaagagacaagaattagagacaaaacataataacattaatcatagg |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4608221 |
ccaacagttactaaaacattcaaaatctaaaacacctacatggtaaagagacaagaattagagacaaaacataataacattaatcatagg |
4608132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4608288 - 4608236
Alignment:
| Q |
19 |
ttcaaaatctaaaacacctacatagtaaagagacaagaattagagacaaaaca |
71 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
4608288 |
ttcaaaatctaaaacaccttcatattgaagagacaagaattagagacaaaaca |
4608236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University