View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11788_high_100 (Length: 269)

Name: NF11788_high_100
Description: NF11788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11788_high_100
NF11788_high_100
[»] chr4 (3 HSPs)
chr4 (18-269)||(54396320-54396571)
chr4 (34-269)||(23596605-23596840)
chr4 (34-269)||(23587753-23587988)
[»] chr7 (9 HSPs)
chr7 (43-257)||(8017445-8017659)
chr7 (43-257)||(8102589-8102803)
chr7 (28-263)||(39985553-39985788)
chr7 (85-245)||(8570275-8570435)
chr7 (85-245)||(8581664-8581824)
chr7 (160-249)||(7877773-7877862)
chr7 (88-212)||(8590605-8590729)
chr7 (184-248)||(8609980-8610044)
chr7 (198-262)||(8628609-8628673)
[»] chr2 (6 HSPs)
chr2 (27-230)||(17716746-17716949)
chr2 (27-230)||(17718010-17718213)
chr2 (83-155)||(12258715-12258787)
chr2 (145-230)||(17705797-17705882)
chr2 (183-230)||(17648100-17648147)
chr2 (183-230)||(17666742-17666789)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 54396320 - 54396571
Alignment:
Q  18 aatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396320 aatagttgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgtt 54396419  T
Q  118 cttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396420 cttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatctt 54396519  T
Q  218 caccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396520 caccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttc 54396571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 269
Target Start/End: Complemental strand, 23596840 - 23596605
Alignment:
Q  34 tcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaag 133  Q
    ||||| || |||||||||||||||||||| || || || |||||||| || ||||| || |||||||||||||||||||| ||||| || || || | ||    
T  23596840 tcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaaccttctaagag 23596741  T
Q  134 ctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagt 233  Q
    | |||| ||| ||||||||||| |||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||    
T  23596740 cccttggatttccactaatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgt 23596641  T
Q  234 atcaccagcagtagctttcacttcgaagatcccttc 269  Q
    ||||||||| ||||||||||| || ||||| |||||    
T  23596640 atcaccagctgtagctttcacctcaaagataccttc 23596605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 269
Target Start/End: Complemental strand, 23587988 - 23587753
Alignment:
Q  34 tcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaag 133  Q
    ||||| || |||||||| ||||||||||| || || || |||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| || | ||    
T  23587988 tcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcagttctcaatcttctaagag 23587889  T
Q  134 ctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagt 233  Q
    | |||| ||| |||||||||||||||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||    
T  23587888 cccttggatttccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgt 23587789  T
Q  234 atcaccagcagtagctttcacttcgaagatcccttc 269  Q
    ||||||||| |||||||| || || ||||| |||||    
T  23587788 atcaccagctgtagctttgacctcaaagataccttc 23587753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 257
Target Start/End: Complemental strand, 8017659 - 8017445
Alignment:
Q  43 tcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcat 142  Q
    ||||||||||||||||| || || || || || ||||| ||||| || |||||||| ||||||||||||||||| || || ||||| |  ||||| |  |    
T  8017659 tcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcacaagctgtcctcaacctcctaagtgctctagggt 8017560  T
Q  143 taccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagc 242  Q
    | ||||||||||||||||| || |||||| ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8017559 ttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagc 8017460  T
Q  243 agtagctttcacttc 257  Q
    |||||| || |||||    
T  8017459 agtagccttaacttc 8017445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 257
Target Start/End: Original strand, 8102589 - 8102803
Alignment:
Q  43 tcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcat 142  Q
    ||||||||||||||||| || || || || || || ||||| || || |||||||| ||||||||||| || ||||| |||||||| |  || || |  |    
T  8102589 tcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcacatgcggttctcaatctcctaagtgccctagggt 8102688  T
Q  143 taccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagc 242  Q
    | || |||||||||||||| || |||||| |||||||   |||||||||  | ||||||||||||||||||||||||||||||||||| |||||||| ||    
T  8102689 ttccgctaatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgc 8102788  T
Q  243 agtagctttcacttc 257  Q
    |||||| || |||||    
T  8102789 agtagccttaacttc 8102803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 263
Target Start/End: Original strand, 39985553 - 39985788
Alignment:
Q  28 tagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctcc 127  Q
    |||||||||||||||||||| | |||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| |||||||| || || || ||||    
T  39985553 tagaaatcaattccttcaaaaagagaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcagtcctcaacctcc 39985652  T
Q  128 tcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaag 227  Q
    | | |||||| |  || ||||| || |||||||| || || ||| | |||||   |||||| || |||||||||||||| |||||||| ||||| |||||    
T  39985653 taagagctctggggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcctcacctccaag 39985752  T
Q  228 atgagtatcaccagcagtagctttcacttcgaagat 263  Q
    ||| || || || || || |||||||| || |||||    
T  39985753 atgggtgtctccggctgtggctttcacctcaaagat 39985788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 8570275 - 8570435
Alignment:
Q  85 gaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaa 184  Q
    |||||||| || || || |||||||||||||||||||| |||||||| ||| |||  || | |||||||||||  || || ||| || | |||| |   |    
T  8570275 gaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttcttcttgaacttcttca 8570374  T
Q  185 caaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 245  Q
    |||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570375 caaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 8581664 - 8581824
Alignment:
Q  85 gaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaa 184  Q
    |||||||| || || |||||||||||||| || || || || || |  ||| ||| ||| ||| |||| ||||  |||| ||| ||| | |||||||| |    
T  8581664 gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccgaca 8581763  T
Q  185 caaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 245  Q
    |||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581764 caaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 7877862 - 7877773
Alignment:
Q  160 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 249  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  7877862 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 8590605 - 8590729
Alignment:
Q  88 agtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaa 187  Q
    ||||| || ||||| ||||||||||||||| | || ||||| | ||| ||||| || ||||| | ||||   ||||| |||||||||||||||   || |    
T  8590605 agtgtccttttagccctctcacaagctgttttcaacctcctaagagcccttgcgttcccacttaaatccactttattcttcctcctaaactccttcacca 8590704  T
Q  188 aatgattcaccattctgttatcaaa 212  Q
    |||| |  |||||||||||||||||    
T  8590705 aatggtgaaccattctgttatcaaa 8590729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  184 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 248  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  198 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 262  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 17716949 - 17716746
Alignment:
Q  27 atagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctc 126  Q
    ||||||||||||||| ||||| | | |||||||||| || || ||||| ||||| || || || | |||||| || ||||||||||| || || || |||    
T  17716949 atagaaatcaattccctcaaatagacaatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacctc 17716850  T
Q  127 ctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaa 226  Q
     | | ||||||||  || |||||||| |||||||| || || ||| | |||||   |||||| || |||||||||||||||| |||||| ||||| ||||    
T  17716849 ataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattctgttattaaaatcctcacctccaa 17716750  T
Q  227 gatg 230  Q
    ||||    
T  17716749 gatg 17716746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 17718213 - 17718010
Alignment:
Q  27 atagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttcttaatctc 126  Q
    ||||||||||||||| ||||| | | |||||||||| || || ||||| | ||| || || || | |||||| || ||||||||||| || || ||  ||    
T  17718213 atagaaatcaattccctcaaatagacaatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaacttc 17718114  T
Q  127 ctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaa 226  Q
     | | ||||||||  || |||||||| |||||||| || || ||| | |||||   |||||| || |||||||||||||||| |||||| ||||| ||||    
T  17718113 ataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaa 17718014  T
Q  227 gatg 230  Q
    ||||    
T  17718013 gatg 17718010  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 12258787 - 12258715
Alignment:
Q  83 aagaaagtgttctcttagctctctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatc 155  Q
    ||||||||| ||| || || ||||||||||||||| | ||||||||||||||||||| ||| ||||| |||||    
T  12258787 aagaaagtgatctttttgcactctcacaagctgttttcaatctcctcaaagctcttggatttccacttatatc 12258715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 17705882 - 17705797
Alignment:
Q  145 ccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 230  Q
    |||||||| |||||||| || || ||| | |||||  ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705882 ccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  183 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 230  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  183 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 230  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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